Shi Y - Search Results

1

Transcriptomic Analyses of Brains of RBM8A Conditional Knockout Mice at Different Developmental Stages Reveal Conserved Signaling Pathways Contributing to Neurodevelopmental Diseases.

McSweeney C, Chen M, Dong F, Sebastian A, Reynolds DJ, Mott J, Pei Z, Zou J, Shi Y, Mao Y. McSweeney C, et al. Among authors: shi y. Int J Mol Sci. 2023 Feb 27;24(5):4600. doi: 10.3390/ijms24054600. Int J Mol Sci. 2023. PMID: 36902031 Free PMC article.

2

A critical role of RBM8a in proliferation and differentiation of embryonic neural progenitors.

Zou D, McSweeney C, Sebastian A, Reynolds DJ, Dong F, Zhou Y, Deng D, Wang Y, Liu L, Zhu J, Zou J, Shi Y, Albert I, Mao Y. Zou D, et al. Among authors: shi y. Neural Dev. 2015 Jun 21;10:18. doi: 10.1186/s13064-015-0045-7. Neural Dev. 2015. PMID: 26094033 Free PMC article.

3

Coupling between alternative polyadenylation and alternative splicing is limited to terminal introns.

Movassat M, Crabb TL, Busch A, Yao C, Reynolds DJ, Shi Y, Hertel KJ. Movassat M, et al. Among authors: shi y. RNA Biol. 2016 Jul 2;13(7):646-55. doi: 10.1080/15476286.2016.1191727. Epub 2016 May 31. RNA Biol. 2016. PMID: 27245359 Free PMC article.

4

Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation.

Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Yao C, et al. Among authors: shi y. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18773-8. doi: 10.1073/pnas.1211101109. Epub 2012 Oct 29. Proc Natl Acad Sci U S A. 2012. PMID: 23112178 Free PMC article.

5

Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-seq.

Yao C, Weng L, Shi Y. Yao C, et al. Among authors: shi y. Methods Mol Biol. 2014;1126:399-410. doi: 10.1007/978-1-62703-980-2_27. Methods Mol Biol. 2014. PMID: 24549678 Free PMC article.

6

Purification of mRNA Processing Complexes Using an RNA Affinity Approach.

Wang X, Shi Y. Wang X, et al. Among authors: shi y. Methods Mol Biol. 2017;1648:53-63. doi: 10.1007/978-1-4939-7204-3_5. Methods Mol Biol. 2017. PMID: 28766289

7

Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation.

Zhu Y, Wang X, Forouzmand E, Jeong J, Qiao F, Sowd GA, Engelman AN, Xie X, Hertel KJ, Shi Y. Zhu Y, et al. Among authors: shi y. Mol Cell. 2018 Jan 4;69(1):62-74.e4. doi: 10.1016/j.molcel.2017.11.031. Epub 2017 Dec 21. Mol Cell. 2018. PMID: 29276085 Free PMC article.

8

Diverse functional elements in RNA predicted transcriptome-wide by orthogonal RNA structure probing.

Chan D, Feng C, England WE, Wyman D, Flynn RA, Wang X, Shi Y, Mortazavi A, Spitale RC. Chan D, et al. Among authors: shi y. Nucleic Acids Res. 2021 Nov 18;49(20):11868-11882. doi: 10.1093/nar/gkab885. Nucleic Acids Res. 2021. PMID: 34634799 Free PMC article.

9

Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling.

Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, Hochedlinger K. Brumbaugh J, et al. Among authors: shi y. Cell. 2018 Jan 11;172(1-2):106-120.e21. doi: 10.1016/j.cell.2017.11.023. Epub 2017 Dec 14. Cell. 2018. PMID: 29249356 Free PMC article.

10

Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation.

Torre D, Fstkchyan YS, Ho JSY, Cheon Y, Patel RS, Degrace EJ, Mzoughi S, Schwarz M, Mohammed K, Seo JS, Romero-Bueno R, Demircioglu D, Hasson D, Tang W, Mahajani SU, Campisi L, Zheng S, Song WS, Wang YC, Shah H, Francoeur N, Soto J, Salfati Z, Weirauch MT, Warburton P, Beaumont K, Smith ML, Mulder L, Villalta SA, Kessenbrock K, Jang C, Lee D, De Rubeis S, Cobos I, Tam O, Hammell MG, Seldin M, Shi Y, Basu U, Sebastiano V, Byun M, Sebra R, Rosenberg BR, Benner C, Guccione E, Marazzi I. Torre D, et al. Among authors: shi y. Mol Cell. 2023 Dec 7;83(23):4255-4271.e9. doi: 10.1016/j.molcel.2023.10.036. Epub 2023 Nov 22. Mol Cell. 2023. PMID: 37995687 Free PMC article.

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