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Rapid Real-time Squiggle Classification for Read until using RawMap.
Sadasivan H, Wadden J, Goliya K, Ranjan P, Dickson RP, Blaauw D, Das R, Narayanasamy S. Sadasivan H, et al. Among authors: wadden j. Arch Clin Biomed Res. 2023;7(1):45-57. doi: 10.26502/acbr.50170318. Epub 2023 Jan 28. Arch Clin Biomed Res. 2023. PMID: 36938368 Free PMC article.
Electronic DNA Analysis of CSF Cell-free Tumor DNA to Quantify Multi-gene Molecular Response in Pediatric High-grade Glioma.
Bruzek AK, Ravi K, Muruganand A, Wadden J, Babila CM, Cantor E, Tunkle L, Wierzbicki K, Stallard S, Dickson RP, Wolfe I, Mody R, Schwartz J, Franson A, Robertson PL, Muraszko KM, Maher CO, Garton HJL, Qin T, Koschmann C. Bruzek AK, et al. Among authors: wadden j. Clin Cancer Res. 2020 Dec 1;26(23):6266-6276. doi: 10.1158/1078-0432.CCR-20-2066. Epub 2020 Oct 21. Clin Cancer Res. 2020. PMID: 33087334 Free PMC article.
SquiggleNet: real-time, direct classification of nanopore signals.
Bao Y, Wadden J, Erb-Downward JR, Ranjan P, Zhou W, McDonald TL, Mills RE, Boyle AP, Dickson RP, Blaauw D, Welch JD. Bao Y, et al. Among authors: wadden j. Genome Biol. 2021 Oct 27;22(1):298. doi: 10.1186/s13059-021-02511-y. Genome Biol. 2021. PMID: 34706748 Free PMC article.
Liquid biopsy in H3K27M diffuse midline glioma.
Patel J, Aittaleb R, Doherty R, Gera A, Lau B, Messinger D, Wadden J, Franson A, Saratsis A, Koschmann C. Patel J, et al. Among authors: wadden j. Neuro Oncol. 2024 May 3;26(Supplement_2):S101-S109. doi: 10.1093/neuonc/noad229. Neuro Oncol. 2024. PMID: 38096156 Free PMC article. Review.
Liquid biopsy in pediatric brain tumors.
Tripathy A, John V, Wadden J, Kong S, Sharba S, Koschmann C. Tripathy A, et al. Among authors: wadden j. Front Genet. 2023 Jan 6;13:1114762. doi: 10.3389/fgene.2022.1114762. eCollection 2022. Front Genet. 2023. PMID: 36685825 Free PMC article. Review.
Serial H3K27M cell-free tumor DNA (cf-tDNA) tracking predicts ONC201 treatment response and progression in diffuse midline glioma.
Cantor E, Wierzbicki K, Tarapore RS, Ravi K, Thomas C, Cartaxo R, Nand Yadav V, Ravindran R, Bruzek AK, Wadden J, John V, May Babila C, Cummings JR, Rahman Kawakibi A, Ji S, Ramos J, Paul A, Walling D, Leonard M, Robertson P, Franson A, Mody R, Garton HJL, Venneti S, Odia Y, Kline C, Vitanza NA, Khatua S, Mueller S, Allen JE, Gardner SL, Koschmann C. Cantor E, et al. Among authors: wadden j. Neuro Oncol. 2022 Aug 1;24(8):1366-1374. doi: 10.1093/neuonc/noac030. Neuro Oncol. 2022. PMID: 35137228 Free PMC article. Clinical Trial.
A road map for the treatment of pediatric diffuse midline glioma.
Koschmann C, Al-Holou WN, Alonso MM, Anastas J, Bandopadhayay P, Barron T, Becher O, Cartaxo R, Castro MG, Chung C, Clausen M, Dang D, Doherty R, Duchatel R, Dun M, Filbin M, Franson A, Galban S, Garcia Moure M, Garton H, Gowda P, Marques JG, Hawkins C, Heath A, Hulleman E, Ji S, Jones C, Kilburn L, Kline C, Koldobskiy MA, Lim D, Lowenstein PR, Lu QR, Lum J, Mack S, Magge S, Marini B, Martin D, Marupudi N, Messinger D, Mody R, Morgan M, Mota M, Muraszko K, Mueller S, Natarajan SK, Nazarian J, Niculcea M, Nuechterlein N, Okada H, Opipari V, Pai MP, Pal S, Peterson E, Phoenix T, Prensner JR, Pun M, Raju GP, Reitman ZJ, Resnick A, Rogawski D, Saratsis A, Sbergio SG, Souweidane M, Stafford JM, Tzaridis T, Venkataraman S, Vittorio O, Wadden J, Wahl D, Wechsler-Reya RJ, Yadav VN, Zhang X, Zhang Q, Venneti S. Koschmann C, et al. Among authors: wadden j. Cancer Cell. 2024 Jan 8;42(1):1-5. doi: 10.1016/j.ccell.2023.11.002. Epub 2023 Nov 30. Cancer Cell. 2024. PMID: 38039965
Single-molecule systems for detection and monitoring of plasma circulating nucleosomes and oncoproteins in Diffuse Midline Glioma.
Erez N, Furth N, Fedyuk V, Wadden J, Aittaleb R, Schwark K, Niculcea M, Miclea M, Mody R, Franson A, Eze A, Nourmohammadi N, Nazarian J, Venneti S, Koschmann C, Shema E. Erez N, et al. Among authors: wadden j. bioRxiv [Preprint]. 2023 Nov 21:2023.11.21.568019. doi: 10.1101/2023.11.21.568019. bioRxiv. 2023. PMID: 38045418 Free PMC article. Preprint.
17 results