Novakovsky GE - Search Results

1

Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion.

Lamarche C, Ward-Hartstonge K, Mi T, Lin DTS, Huang Q, Brown A, Edwards K, Novakovsky GE, Qi CN, Kobor MS, Zebley CC, Weber EW, Mackall CL, Levings MK. Lamarche C, et al. Among authors: novakovsky ge. Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2219086120. doi: 10.1073/pnas.2219086120. Epub 2023 Mar 27. Proc Natl Acad Sci U S A. 2023. PMID: 36972454 Free PMC article.

2

Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain.

Ng B, Casazza W, Patrick E, Tasaki S, Novakovsky G, Felsky D, Ma Y, Bennett DA, Gaiteri C, De Jager PL, Mostafavi S. Ng B, et al. Am J Hum Genet. 2019 Sep 5;105(3):562-572. doi: 10.1016/j.ajhg.2019.07.016. Epub 2019 Aug 22. Am J Hum Genet. 2019. PMID: 31447098 Free PMC article.

3

In silico discovery of small molecules for efficient stem cell differentiation into definitive endoderm.

Novakovsky G, Sasaki S, Fornes O, Omur ME, Huang H, Bayly CL, Zhang D, Lim N, Cherkasov A, Pavlidis P, Mostafavi S, Lynn FC, Wasserman WW. Novakovsky G, et al. Stem Cell Reports. 2023 Mar 14;18(3):765-781. doi: 10.1016/j.stemcr.2023.01.008. Epub 2023 Feb 16. Stem Cell Reports. 2023. PMID: 36801003 Free PMC article.

4

Biologically relevant transfer learning improves transcription factor binding prediction.

Novakovsky G, Saraswat M, Fornes O, Mostafavi S, Wasserman WW. Novakovsky G, et al. Genome Biol. 2021 Sep 27;22(1):280. doi: 10.1186/s13059-021-02499-5. Genome Biol. 2021. PMID: 34579793 Free PMC article.

5

ExplaiNN: interpretable and transparent neural networks for genomics.

Novakovsky G, Fornes O, Saraswat M, Mostafavi S, Wasserman WW. Novakovsky G, et al. Genome Biol. 2023 Jun 27;24(1):154. doi: 10.1186/s13059-023-02985-y. Genome Biol. 2023. PMID: 37370113 Free PMC article.

6

Obtaining genetics insights from deep learning via explainable artificial intelligence.

Novakovsky G, Dexter N, Libbrecht MW, Wasserman WW, Mostafavi S. Novakovsky G, et al. Nat Rev Genet. 2023 Feb;24(2):125-137. doi: 10.1038/s41576-022-00532-2. Epub 2022 Oct 3. Nat Rev Genet. 2023. PMID: 36192604 Review.

7

Functional effects of chimeric antigen receptor co-receptor signaling domains in human regulatory T cells.

Dawson NAJ, Rosado-Sánchez I, Novakovsky GE, Fung VCW, Huang Q, McIver E, Sun G, Gillies J, Speck M, Orban PC, Mojibian M, Levings MK. Dawson NAJ, et al. Among authors: novakovsky ge. Sci Transl Med. 2020 Aug 19;12(557):eaaz3866. doi: 10.1126/scitranslmed.aaz3866. Sci Transl Med. 2020. PMID: 32817364

8

bioSyntax: syntax highlighting for computational biology.

Babaian A, Ebou A, Fegen A, Kam HY, Novakovsky GE, Wong J, Aïssi D, Yao L. Babaian A, et al. Among authors: novakovsky ge. BMC Bioinformatics. 2018 Aug 22;19(1):303. doi: 10.1186/s12859-018-2315-y. BMC Bioinformatics. 2018. PMID: 30134911 Free PMC article.

9

Phylogenomic Analysis of Type 1 NADH:Quinone Oxidoreductase.

Novakovsky GE, Dibrova DV, Mulkidjanian AY. Novakovsky GE, et al. Biochemistry (Mosc). 2016 Jul;81(7):770-84. doi: 10.1134/S0006297916070142. Biochemistry (Mosc). 2016. PMID: 27449624 Free article.

10

A sustained deficiency of mitochondrial respiratory complex III induces an apoptotic cell death through the p53-mediated inhibition of pro-survival activities of the activating transcription factor 4.

Evstafieva AG, Garaeva AA, Khutornenko AA, Klepikova AV, Logacheva MD, Penin AA, Novakovsky GE, Kovaleva IE, Chumakov PM. Evstafieva AG, et al. Among authors: novakovsky ge. Cell Death Dis. 2014 Nov 6;5(11):e1511. doi: 10.1038/cddis.2014.469. Cell Death Dis. 2014. PMID: 25375376 Free PMC article.

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