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Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species.
Dai Z, Pomraning KR, Deng S, Kim J, Campbell KB, Robles AL, Hofstad BA, Munoz N, Gao Y, Lemmon T, Swita MS, Zucker JD, Kim YM, Burnum-Johnson KE, Magnuson JK. Dai Z, et al. Among authors: gao y. Biotechnol Biofuels Bioprod. 2023 Mar 29;16(1):53. doi: 10.1186/s13068-023-02288-1. Biotechnol Biofuels Bioprod. 2023. PMID: 36991437 Free PMC article.
Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides.
Geiselman GM, Zhuang X, Kirby J, Tran-Gyamfi MB, Prahl JP, Sundstrom ER, Gao Y, Munoz Munoz N, Nicora CD, Clay DM, Papa G, Burnum-Johnson KE, Magnuson JK, Tanjore D, Skerker JM, Gladden JM. Geiselman GM, et al. Among authors: gao y. Microb Cell Fact. 2020 Feb 5;19(1):24. doi: 10.1186/s12934-020-1293-8. Microb Cell Fact. 2020. PMID: 32024522 Free PMC article.
Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design.
Chaves JE, Wilton R, Gao Y, Munoz NM, Burnet MC, Schmitz Z, Rowan J, Burdick LH, Elmore J, Guss A, Close D, Magnuson JK, Burnum-Johnson KE, Michener JK. Chaves JE, et al. Among authors: gao y. Metab Eng Commun. 2020 Jul 19;11:e00139. doi: 10.1016/j.mec.2020.e00139. eCollection 2020 Dec. Metab Eng Commun. 2020. PMID: 32775199 Free PMC article.
High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440.
Gao Y, Fillmore TL, Munoz N, Bentley GJ, Johnson CW, Kim J, Meadows JA, Zucker JD, Burnet MC, Lipton AK, Bilbao A, Orton DJ, Kim YM, Moore RJ, Robinson EW, Baker SE, Webb-Robertson BM, Guss AM, Gladden JM, Beckham GT, Magnuson JK, Burnum-Johnson KE. Gao Y, et al. Front Bioeng Biotechnol. 2020 Dec 2;8:603488. doi: 10.3389/fbioe.2020.603488. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 33425868 Free PMC article.
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides.
Kim J, Coradetti ST, Kim YM, Gao Y, Yaegashi J, Zucker JD, Munoz N, Zink EM, Burnum-Johnson KE, Baker SE, Simmons BA, Skerker JM, Gladden JM, Magnuson JK. Kim J, et al. Among authors: gao y. Front Bioeng Biotechnol. 2021 Jan 8;8:612832. doi: 10.3389/fbioe.2020.612832. eCollection 2020. Front Bioeng Biotechnol. 2021. PMID: 33585414 Free PMC article.
Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.
Kirby J, Geiselman GM, Yaegashi J, Kim J, Zhuang X, Tran-Gyamfi MB, Prahl JP, Sundstrom ER, Gao Y, Munoz N, Burnum-Johnson KE, Benites VT, Baidoo EEK, Fuhrmann A, Seibel K, Webb-Robertson BM, Zucker J, Nicora CD, Tanjore D, Magnuson JK, Skerker JM, Gladden JM. Kirby J, et al. Among authors: gao y. Biotechnol Biofuels. 2021 Apr 21;14(1):101. doi: 10.1186/s13068-021-01950-w. Biotechnol Biofuels. 2021. PMID: 33883010 Free PMC article.
Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus.
Pomraning KR, Dai Z, Munoz N, Kim YM, Gao Y, Deng S, Kim J, Hofstad BA, Swita MS, Lemmon T, Collett JR, Panisko EA, Webb-Robertson BM, Zucker JD, Nicora CD, De Paoli H, Baker SE, Burnum-Johnson KE, Hillson NJ, Magnuson JK. Pomraning KR, et al. Among authors: gao y. Front Bioeng Biotechnol. 2021 Apr 7;9:603832. doi: 10.3389/fbioe.2021.603832. eCollection 2021. Front Bioeng Biotechnol. 2021. PMID: 33898398 Free PMC article.
Moisture modulates soil reservoirs of active DNA and RNA viruses.
Wu R, Davison MR, Gao Y, Nicora CD, Mcdermott JE, Burnum-Johnson KE, Hofmockel KS, Jansson JK. Wu R, et al. Among authors: gao y. Commun Biol. 2021 Aug 26;4(1):992. doi: 10.1038/s42003-021-02514-2. Commun Biol. 2021. PMID: 34446837 Free PMC article.
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