Blencowe B - Search Results

1

RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.

Ray D, Laverty KU, Jolma A, Nie K, Samson R, Pour SE, Tam CL, von Krosigk N, Nabeel-Shah S, Albu M, Zheng H, Perron G, Lee H, Najafabadi H, Blencowe B, Greenblatt J, Morris Q, Hughes TR. Ray D, et al. Among authors: blencowe b. Sci Rep. 2023 Mar 31;13(1):5238. doi: 10.1038/s41598-023-32245-9. Sci Rep. 2023. PMID: 37002329 Free PMC article.

2

Probing microRNAs with microarrays: tissue specificity and functional inference.

Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR. Babak T, et al. RNA. 2004 Nov;10(11):1813-9. doi: 10.1261/rna.7119904. RNA. 2004. PMID: 15496526 Free PMC article.

3

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR. Zhang W, et al. J Biol. 2004;3(5):21. doi: 10.1186/jbiol16. Epub 2004 Dec 6. J Biol. 2004. PMID: 15588312 Free PMC article.

4

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.

Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ. Pan Q, et al. Mol Cell. 2004 Dec 22;16(6):929-41. doi: 10.1016/j.molcel.2004.12.004. Mol Cell. 2004. PMID: 15610736 Free article.

5

Alternative splicing of conserved exons is frequently species-specific in human and mouse.

Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. Pan Q, et al. Trends Genet. 2005 Feb;21(2):73-7. doi: 10.1016/j.tig.2004.12.004. Trends Genet. 2005. PMID: 15661351

6

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

Babak T, Blencowe BJ, Hughes TR. Babak T, et al. BMC Genomics. 2005 Aug 5;6:104. doi: 10.1186/1471-2164-6-104. BMC Genomics. 2005. PMID: 16083503 Free PMC article.

7

Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.

Frey BJ, Mohammad N, Morris QD, Zhang W, Robinson MD, Mnaimneh S, Chang R, Pan Q, Sat E, Rossant J, Bruneau BG, Aubin JE, Blencowe BJ, Hughes TR. Frey BJ, et al. Nat Genet. 2005 Sep;37(9):991-6. doi: 10.1038/ng1630. Epub 2005 Aug 28. Nat Genet. 2005. PMID: 16127451

8

Inferring global levels of alternative splicing isoforms using a generative model of microarray data.

Shai O, Morris QD, Blencowe BJ, Frey BJ. Shai O, et al. Bioinformatics. 2006 Mar 1;22(5):606-13. doi: 10.1093/bioinformatics/btk028. Epub 2006 Jan 10. Bioinformatics. 2006. PMID: 16403798

9

Microarray analysis of RNA processing and modification.

Hughes TR, Hiley SL, Saltzman AL, Babak T, Blencowe BJ. Hughes TR, et al. Methods Enzymol. 2006;410:300-16. doi: 10.1016/S0076-6879(06)10014-2. Methods Enzymol. 2006. PMID: 16938557 Review.

10

Considerations in the identification of functional RNA structural elements in genomic alignments.

Babak T, Blencowe BJ, Hughes TR. Babak T, et al. BMC Bioinformatics. 2007 Jan 30;8:33. doi: 10.1186/1471-2105-8-33. BMC Bioinformatics. 2007. PMID: 17263882 Free PMC article.

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