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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.
Schreiber J, Boix C, Wook Lee J, Li H, Guan Y, Chang CC, Chang JC, Hawkins-Hooker A, Schölkopf B, Schweikert G, Carulla MR, Canakoglu A, Guzzo F, Nanni L, Masseroli M, Carman MJ, Pinoli P, Hong C, Yip KY, Spence JP, Batra SS, Song YS, Mahony S, Zhang Z, Tan W, Shen Y, Sun Y, Shi M, Adrian J, Sandstrom R, Farrell N, Halow J, Lee K, Jiang L, Yang X, Epstein C, Strattan JS, Bernstein B, Snyder M, Kellis M, Stafford W, Kundaje A; ENCODE Imputation Challenge Participants. Schreiber J, et al. Among authors: spence jp. Genome Biol. 2023 Apr 18;24(1):79. doi: 10.1186/s13059-023-02915-y. Genome Biol. 2023. PMID: 37072822 Free PMC article.
The Site Frequency Spectrum for General Coalescents.
Spence JP, Kamm JA, Song YS. Spence JP, et al. Genetics. 2016 Apr;202(4):1549-61. doi: 10.1534/genetics.115.184101. Epub 2016 Feb 16. Genetics. 2016. PMID: 26883445 Free PMC article.
Predicting the effect of CRISPR-Cas9-based epigenome editing.
Batra SS, Cabrera A, Spence JP, Hilton IB, Song YS. Batra SS, et al. Among authors: spence jp. bioRxiv [Preprint]. 2023 Oct 3:2023.10.03.560674. doi: 10.1101/2023.10.03.560674. bioRxiv. 2023. PMID: 37873127 Free PMC article. Preprint.
Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation.
Fan S, Spence JP, Feng Y, Hansen MEB, Terhorst J, Beltrame MH, Ranciaro A, Hirbo J, Beggs W, Thomas N, Nyambo T, Mpoloka SW, Mokone GG, Njamnshi A, Folkunang C, Meskel DW, Belay G, Song YS, Tishkoff SA. Fan S, et al. Among authors: spence jp. Cell. 2023 Mar 2;186(5):923-939.e14. doi: 10.1016/j.cell.2023.01.042. Cell. 2023. PMID: 36868214 Free PMC article.
45 results