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A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction.
Microb Genom. 2023 Apr;9(4):mgen000998. doi: 10.1099/mgen.0.000998.
Microb Genom. 2023.
PMID: 37083600
Free PMC article.
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Ndlangisa KM, du Plessis M, Lo S, de Gouveia L, Chaguza C, Antonio M, Kwambana-Adams B, Cornick J, Everett DB, Dagan R, Hawkins PA, Beall B, Corso A, Grassi Almeida SC, Ochoa TJ, Obaro S, Shakoor S, Donkor ES, Gladstone RA, Ho PL, Paragi M, Doiphode S, Srifuengfung S, Ford R, Moïsi J, Saha SK, Bigogo G, Sigauque B, Eser ÖK, Elmdaghri N, Titov L, Turner P, Kumar KLR, Kandasamy R, Egorova E, Ip M, Breiman RF, Klugman KP, McGee L, Bentley SD, von Gottberg A, The Global Pneumococcal Sequencing Consortium.
Ndlangisa KM, et al. Among authors: the global pneumococcal sequencing consortium.
Microb Genom. 2022 Apr;8(4):000746. doi: 10.1099/mgen.0.000746.
Microb Genom. 2022.
PMID: 35384831
Free PMC article.
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Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.
Gladstone RA, Lo SW, Goater R, Yeats C, Taylor B, Hadfield J, Lees JA, Croucher NJ, van Tonder AJ, Bentley LJ, Quah FX, Blaschke AJ, Pershing NL, Byington CL, Balaji V, Hryniewicz W, Sigauque B, Ravikumar KL, Almeida SCG, Ochoa TJ, Ho PL, du Plessis M, Ndlangisa KM, Cornick JE, Kwambana-Adams B, Benisty R, Nzenze SA, Madhi SA, Hawkins PA, Pollard AJ, Everett DB, Antonio M, Dagan R, Klugman KP, von Gottberg A, Metcalf BJ, Li Y, Beall BW, McGee L, Breiman RF, Aanensen DM, Bentley SD, The Global Pneumococcal Sequencing Consortium.
Gladstone RA, et al. Among authors: the global pneumococcal sequencing consortium.
Microb Genom. 2020 May;6(5):e000357. doi: 10.1099/mgen.0.000357. Epub 2020 Apr 29.
Microb Genom. 2020.
PMID: 32375991
Free PMC article.
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SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data.
Epping L, van Tonder AJ, Gladstone RA, The Global Pneumococcal Sequencing Consortium, Bentley SD, Page AJ, Keane JA.
Epping L, et al. Among authors: the global pneumococcal sequencing consortium.
Microb Genom. 2018 Jul;4(7):e000186. doi: 10.1099/mgen.0.000186. Epub 2018 Jun 15.
Microb Genom. 2018.
PMID: 29870330
Free PMC article.
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