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DELVE: feature selection for preserving biological trajectories in single-cell data.
Nat Commun. 2024 Mar 29;15(1):2765. doi: 10.1038/s41467-024-46773-z.
Nat Commun. 2024.
PMID: 38553455
Free PMC article.
Cell cycle plasticity underlies fractional resistance to palbociclib in ER+/HER2- breast tumor cells.
Zikry TM, Wolff SC, Ranek JS, Davis HM, Naugle A, Luthra N, Whitman AA, Kedziora KM, Stallaert W, Kosorok MR, Spanheimer PM, Purvis JE.
Zikry TM, et al. Among authors: ranek js.
Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2309261121. doi: 10.1073/pnas.2309261121. Epub 2024 Feb 7.
Proc Natl Acad Sci U S A. 2024.
PMID: 38324568
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Feature selection for preserving biological trajectories in single-cell data.
Ranek JS, Stallaert W, Milner J, Stanley N, Purvis JE.
Ranek JS, et al.
bioRxiv [Preprint]. 2023 May 12:2023.05.09.540043. doi: 10.1101/2023.05.09.540043.
bioRxiv. 2023.
PMID: 37214963
Free PMC article.
Updated.
Preprint.
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Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction.
Ranek JS, Stanley N, Purvis JE.
Ranek JS, et al.
Genome Biol. 2022 Sep 5;23(1):186. doi: 10.1186/s13059-022-02749-0.
Genome Biol. 2022.
PMID: 36064614
Free PMC article.
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A Proximal-to-Distal Survey of Healthy Adult Human Small Intestine and Colon Epithelium by Single-Cell Transcriptomics.
Burclaff J, Bliton RJ, Breau KA, Ok MT, Gomez-Martinez I, Ranek JS, Bhatt AP, Purvis JE, Woosley JT, Magness ST.
Burclaff J, et al. Among authors: ranek js.
Cell Mol Gastroenterol Hepatol. 2022;13(5):1554-1589. doi: 10.1016/j.jcmgh.2022.02.007. Epub 2022 Feb 15.
Cell Mol Gastroenterol Hepatol. 2022.
PMID: 35176508
Free PMC article.
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The structure of the human cell cycle.
Stallaert W, Kedziora KM, Taylor CD, Zikry TM, Ranek JS, Sobon HK, Taylor SR, Young CL, Cook JG, Purvis JE.
Stallaert W, et al. Among authors: ranek js.
Cell Syst. 2022 Jan 19;13(1):103. doi: 10.1016/j.cels.2021.12.006.
Cell Syst. 2022.
PMID: 35051372
Free PMC article.
No abstract available.
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The structure of the human cell cycle.
Stallaert W, Kedziora KM, Taylor CD, Zikry TM, Ranek JS, Sobon HK, Taylor SR, Young CL, Cook JG, Purvis JE.
Stallaert W, et al. Among authors: ranek js.
Cell Syst. 2022 Mar 16;13(3):230-240.e3. doi: 10.1016/j.cels.2021.10.007. Epub 2021 Nov 19.
Cell Syst. 2022.
PMID: 34800361
Free PMC article.
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