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Bayesian compositional regression with microbiome features via variational inference.
Scott DAV, Benavente E, Libiseller-Egger J, Fedorov D, Phelan J, Ilina E, Tikhonova P, Kudryavstev A, Galeeva J, Clark T, Lewin A. Scott DAV, et al. Among authors: benavente e. BMC Bioinformatics. 2023 May 22;24(1):210. doi: 10.1186/s12859-023-05219-x. BMC Bioinformatics. 2023. PMID: 37217852 Free PMC article.
Corrigendum to "Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes" [Int. J. Parasitol. Drugs and Drug Resist. 7 (2017) 174-180].
Gomes AR, Ravenhall M, Benavente ED, Talman A, Sutherland C, Roper C, Clark TG, Campino S. Gomes AR, et al. Int J Parasitol Drugs Drug Resist. 2017 Dec;7(3):433. doi: 10.1016/j.ijpddr.2017.11.001. Epub 2017 Nov 6. Int J Parasitol Drugs Drug Resist. 2017. PMID: 29128302 Free PMC article. No abstract available.
A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line.
Benavente ED, de Sessions PF, Moon RW, Grainger M, Holder AA, Blackman MJ, Roper C, Drakeley CJ, Pain A, Sutherland CJ, Hibberd ML, Campino S, Clark TG. Benavente ED, et al. Int J Parasitol. 2018 Mar;48(3-4):191-196. doi: 10.1016/j.ijpara.2017.09.008. Epub 2017 Dec 16. Int J Parasitol. 2018. PMID: 29258833 Free article.
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
O'Sullivan DM, Doyle RM, Temisak S, Redshaw N, Whale AS, Logan G, Huang J, Fischer N, Amos GCA, Preston MD, Marchesi JR, Wagner J, Parkhill J, Motro Y, Denise H, Finn RD, Harris KA, Kay GL, O'Grady J, Ransom-Jones E, Wu H, Laing E, Studholme DJ, Benavente ED, Phelan J, Clark TG, Moran-Gilad J, Huggett JF. O'Sullivan DM, et al. Among authors: benavente ed. Sci Rep. 2021 May 19;11(1):10590. doi: 10.1038/s41598-021-89881-2. Sci Rep. 2021. PMID: 34012005 Free PMC article.
Distinctive genetic structure and selection patterns in Plasmodium vivax from South Asia and East Africa.
Benavente ED, Manko E, Phelan J, Campos M, Nolder D, Fernandez D, Velez-Tobon G, Castaño AT, Dombrowski JG, Marinho CRF, Aguiar ACC, Pereira DB, Sriprawat K, Nosten F, Moon R, Sutherland CJ, Campino S, Clark TG. Benavente ED, et al. Nat Commun. 2021 May 26;12(1):3160. doi: 10.1038/s41467-021-23422-3. Nat Commun. 2021. PMID: 34039976 Free PMC article.
81 results