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Chromatin alternates between A and B compartments at kilobase scale for subgenic organization.
Harris HL, Gu H, Olshansky M, Wang A, Farabella I, Eliaz Y, Kalluchi A, Krishna A, Jacobs M, Cauer G, Pham M, Rao SSP, Dudchenko O, Omer A, Mohajeri K, Kim S, Nichols MH, Davis ES, Gkountaroulis D, Udupa D, Aiden AP, Corces VG, Phanstiel DH, Noble WS, Nir G, Di Pierro M, Seo JS, Talkowski ME, Aiden EL, Rowley MJ. Harris HL, et al. Among authors: wang a. Nat Commun. 2023 Jun 6;14(1):3303. doi: 10.1038/s41467-023-38429-1. Nat Commun. 2023. PMID: 37280210 Free PMC article.
SMOG 2 and OpenSMOG: Extending the limits of structure-based models.
de Oliveira AB Jr, Contessoto VG, Hassan A, Byju S, Wang A, Wang Y, Dodero-Rojas E, Mohanty U, Noel JK, Onuchic JN, Whitford PC. de Oliveira AB Jr, et al. Among authors: wang y, wang a. Protein Sci. 2022 Jan;31(1):158-172. doi: 10.1002/pro.4209. Epub 2021 Nov 1. Protein Sci. 2022. PMID: 34655449 Free PMC article.
Using SMOG 2 to Simulate Complex Biomolecular Assemblies.
Levi M, Bandarkar P, Yang H, Wang A, Mohanty U, Noel JK, Whitford PC. Levi M, et al. Among authors: wang a. Methods Mol Biol. 2019;2022:129-151. doi: 10.1007/978-1-4939-9608-7_6. Methods Mol Biol. 2019. PMID: 31396902
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