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Intronic small nucleolar RNAs regulate host gene splicing through base pairing with their adjacent intronic sequences.
Bergeron D, Faucher-Giguère L, Emmerichs AK, Choquet K, Song KS, Deschamps-Francoeur G, Fafard-Couture É, Rivera A, Couture S, Churchman LS, Heyd F, Abou Elela S, Scott MS. Bergeron D, et al. Among authors: churchman ls. Genome Biol. 2023 Jul 6;24(1):160. doi: 10.1186/s13059-023-03002-y. Genome Biol. 2023. PMID: 37415181 Free PMC article.
RNA polymerase II pausing temporally coordinates cell cycle progression and erythroid differentiation.
Martell DJ, Merens HE, Caulier A, Fiorini C, Ulirsch JC, Ietswaart R, Choquet K, Graziadei G, Brancaleoni V, Cappellini MD, Scott C, Roberts N, Proven M, Roy NBA, Babbs C, Higgs DR, Sankaran VG, Churchman LS. Martell DJ, et al. Among authors: churchman ls. Dev Cell. 2023 Oct 23;58(20):2112-2127.e4. doi: 10.1016/j.devcel.2023.07.018. Epub 2023 Aug 15. Dev Cell. 2023. PMID: 37586368
Central dogma rates in human mitochondria.
McShane E, Churchman LS. McShane E, et al. Among authors: churchman ls. Hum Mol Genet. 2024 May 22;33(R1):R34-R41. doi: 10.1093/hmg/ddae036. Hum Mol Genet. 2024. PMID: 38779776 Review.
Timing is everything: advances in quantifying splicing kinetics.
Merens HE, Choquet K, Baxter-Koenigs AR, Churchman LS. Merens HE, et al. Among authors: churchman ls. Trends Cell Biol. 2024 May 21:S0962-8924(24)00070-9. doi: 10.1016/j.tcb.2024.03.007. Online ahead of print. Trends Cell Biol. 2024. PMID: 38777664 Review.
Post-transcriptional splicing can occur in a slow-moving zone around the gene.
Coté A, O'Farrell A, Dardani I, Dunagin M, Coté C, Wan Y, Bayatpour S, Drexler HL, Alexander KA, Chen F, Wassie AT, Patel R, Pham K, Boyden ES, Berger S, Phillips-Cremins J, Churchman LS, Raj A. Coté A, et al. Among authors: churchman ls. Elife. 2024 Apr 5;12:RP91357. doi: 10.7554/eLife.91357. Elife. 2024. PMID: 38577979 Free PMC article.
A kinetic dichotomy between mitochondrial and nuclear gene expression processes.
McShane E, Couvillion M, Ietswaart R, Prakash G, Smalec BM, Soto I, Baxter-Koenigs AR, Choquet K, Churchman LS. McShane E, et al. Among authors: churchman ls. Mol Cell. 2024 Apr 18;84(8):1541-1555.e11. doi: 10.1016/j.molcel.2024.02.028. Epub 2024 Mar 18. Mol Cell. 2024. PMID: 38503286
Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle.
Litsios A, Grys BT, Kraus OZ, Friesen H, Ross C, Masinas MPD, Forster DT, Couvillion MT, Timmermann S, Billmann M, Myers C, Johnsson N, Churchman LS, Boone C, Andrews BJ. Litsios A, et al. Among authors: churchman ls. Cell. 2024 Mar 14;187(6):1490-1507.e21. doi: 10.1016/j.cell.2024.02.014. Epub 2024 Mar 6. Cell. 2024. PMID: 38452761 Free article.
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