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Genome-Wide Association Study Identifies 4 Novel Risk Loci for Small Intestinal Neuroendocrine Tumors Including a Missense Mutation in LGR5.
Giri AK, Aavikko M, Wartiovaara L, Lemmetyinen T, Karjalainen J, Mehtonen J, Palin K, Välimäki N, Tamlander M, Saikkonen R, Karhu A, Morgunova E, Sun B, Runz H, Palta P, Luo S, Joensuu H, Mäkelä TP, Kostiainen I, Schalin-Jäntti C, FinnGen, Palotie A, Aaltonen LA, Ollila S, Daly MJ. Giri AK, et al. Among authors: valimaki n. Gastroenterology. 2023 Oct;165(4):861-873. doi: 10.1053/j.gastro.2023.06.031. Epub 2023 Jul 14. Gastroenterology. 2023. PMID: 37453564 Free article.
Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion.
Llarena AK, Zhang J, Vehkala M, Välimäki N, Hakkinen M, Hänninen ML, Roasto M, Mäesaar M, Taboada E, Barker D, Garofolo G, Cammà C, Di Giannatale E, Corander J, Rossi M. Llarena AK, et al. Among authors: valimaki n. Microb Genom. 2016 Oct 21;2(10):e000088. doi: 10.1099/mgen.0.000088. eCollection 2016 Oct. Microb Genom. 2016. PMID: 28348829 Free PMC article.
The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI. Cremers AJH, et al. Among authors: valimaki n. Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417. Clin Infect Dis. 2019. PMID: 29788414
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.
Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I. Ahola V, et al. Among authors: valimaki n. Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737. Nat Commun. 2014. PMID: 25189940 Free PMC article.
Global and regional dissemination and evolution of Burkholderia pseudomallei.
Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ. Chewapreecha C, et al. Among authors: valimaki n. Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263. Nat Microbiol. 2017. PMID: 28112723 Free PMC article.
Exploration and retrieval of whole-metagenome sequencing samples.
Seth S, Välimäki N, Kaski S, Honkela A. Seth S, et al. Among authors: valimaki n. Bioinformatics. 2014 Sep 1;30(17):2471-9. doi: 10.1093/bioinformatics/btu340. Epub 2014 May 19. Bioinformatics. 2014. PMID: 24845653 Free PMC article.
Towards pan-genome read alignment to improve variation calling.
Valenzuela D, Norri T, Välimäki N, Pitkänen E, Mäkinen V. Valenzuela D, et al. Among authors: valimaki n. BMC Genomics. 2018 May 9;19(Suppl 2):87. doi: 10.1186/s12864-018-4465-8. BMC Genomics. 2018. PMID: 29764365 Free PMC article.
60 results