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Parameter Estimation and Species Tree Rooting Using ALE and GeneRax.
Williams TA, Davín AA, Morel B, Szánthó LL, Spang A, Stamatakis A, Hugenholtz P, Szöllősi GJ. Williams TA, et al. Among authors: szollosi gj. Genome Biol Evol. 2023 Jul 3;15(7):evad134. doi: 10.1093/gbe/evad134. Genome Biol Evol. 2023. PMID: 37463417 Free PMC article.
Evolution of gene neighborhoods within reconciled phylogenies.
Bérard S, Gallien C, Boussau B, Szöllősi GJ, Daubin V, Tannier E. Bérard S, et al. Among authors: szollosi gj. Bioinformatics. 2012 Sep 15;28(18):i382-i388. doi: 10.1093/bioinformatics/bts374. Bioinformatics. 2012. PMID: 22962456 Free PMC article.
Emergent neutrality in adaptive asexual evolution.
Schiffels S, Szöllosi GJ, Mustonen V, Lässig M. Schiffels S, et al. Among authors: szollosi gj. Genetics. 2011 Dec;189(4):1361-75. doi: 10.1534/genetics.111.132027. Epub 2011 Sep 16. Genetics. 2011. PMID: 21926305 Free PMC article.
Lateral gene transfer, rearrangement, reconciliation.
Patterson M, Szöllősi G, Daubin V, Tannier E. Patterson M, et al. BMC Bioinformatics. 2013;14 Suppl 15(Suppl 15):S4. doi: 10.1186/1471-2105-14-S15-S4. Epub 2013 Oct 15. BMC Bioinformatics. 2013. PMID: 24564205 Free PMC article.
Integrative modeling of gene and genome evolution roots the archaeal tree of life.
Williams TA, Szöllősi GJ, Spang A, Foster PG, Heaps SE, Boussau B, Ettema TJG, Embley TM. Williams TA, et al. Among authors: szollosi gj. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):E4602-E4611. doi: 10.1073/pnas.1618463114. Epub 2017 May 22. Proc Natl Acad Sci U S A. 2017. PMID: 28533395 Free PMC article.
Gene transfers can date the tree of life.
Davín AA, Tannier E, Williams TA, Boussau B, Daubin V, Szöllősi GJ. Davín AA, et al. Among authors: szollosi gj. Nat Ecol Evol. 2018 May;2(5):904-909. doi: 10.1038/s41559-018-0525-3. Epub 2018 Apr 2. Nat Ecol Evol. 2018. PMID: 29610471 Free PMC article.
91 results