Calabrese JM - Search Results

1

SAFB associates with nascent RNAs and can promote gene expression in mouse embryonic stem cells.

Cherney RE, Eberhard QE, Giri G, Mills CA, Porrello A, Zhang Z, White D, Trotman JB, Herring LE, Dominguez D, Calabrese JM. Cherney RE, et al. Among authors: calabrese jm. RNA. 2023 Oct;29(10):1535-1556. doi: 10.1261/rna.079569.122. Epub 2023 Jul 19. RNA. 2023. PMID: 37468167

2

Characterization of the short RNAs bound by the P19 suppressor of RNA silencing in mouse embryonic stem cells.

Calabrese JM, Sharp PA. Calabrese JM, et al. RNA. 2006 Dec;12(12):2092-102. doi: 10.1261/rna.224606. Epub 2006 Oct 24. RNA. 2006. PMID: 17135486 Free PMC article.

3

A survey of imprinted gene expression in mouse trophoblast stem cells.

Calabrese JM, Starmer J, Schertzer MD, Yee D, Magnuson T. Calabrese JM, et al. G3 (Bethesda). 2015 Feb 23;5(5):751-9. doi: 10.1534/g3.114.016238. G3 (Bethesda). 2015. PMID: 25711832 Free PMC article.

4

Nonlinear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains.

Sprague D, Waters SA, Kirk JM, Wang JR, Samollow PB, Waters PD, Calabrese JM. Sprague D, et al. Among authors: calabrese jm. RNA. 2019 Aug;25(8):1004-1019. doi: 10.1261/rna.069815.118. Epub 2019 May 16. RNA. 2019. PMID: 31097619 Free PMC article.

5

A piggyBac-based toolkit for inducible genome editing in mammalian cells.

Schertzer MD, Thulson E, Braceros KCA, Lee DM, Hinkle ER, Murphy RM, Kim SO, Vitucci ECM, Calabrese JM. Schertzer MD, et al. Among authors: calabrese jm. RNA. 2019 Aug;25(8):1047-1058. doi: 10.1261/rna.068932.118. Epub 2019 May 17. RNA. 2019. PMID: 31101683 Free PMC article.

6

RETRACTED: A 5' fragment of Xist can sequester RNA produced from adjacent genes on chromatin.

Lee DM, Trotman JB, Cherney RE, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Lee DM, et al. Among authors: calabrese jm. Nucleic Acids Res. 2019 Jul 26;47(13):7049-7062. doi: 10.1093/nar/gkz432. Nucleic Acids Res. 2019. PMID: 31114903 Free PMC article. Retracted.

7

lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA.

Schertzer MD, Braceros KCA, Starmer J, Cherney RE, Lee DM, Salazar G, Justice M, Bischoff SR, Cowley DO, Ariel P, Zylka MJ, Dowen JM, Magnuson T, Calabrese JM. Schertzer MD, et al. Among authors: calabrese jm. Mol Cell. 2019 Aug 8;75(3):523-537.e10. doi: 10.1016/j.molcel.2019.05.028. Epub 2019 Jun 27. Mol Cell. 2019. PMID: 31256989 Free PMC article.

8

RETRACTION: A 5' fragment of Xist can sequester RNA produced from adjacent genes on chromatin.

Lee DM, Trotman JB, Cherney RE, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Lee DM, et al. Among authors: calabrese jm. Nucleic Acids Res. 2020 Mar 18;48(5):2790. doi: 10.1093/nar/gkaa050. Nucleic Acids Res. 2020. PMID: 31989176 Free PMC article. No abstract available.

9

How to silence an X chromosome.

Trotman JB, Calabrese JM. Trotman JB, et al. Among authors: calabrese jm. Nature. 2020 Feb;578(7795):365-366. doi: 10.1038/d41586-020-00207-0. Nature. 2020. PMID: 32066915 No abstract available.

10

Elements at the 5' end of Xist harbor SPEN-independent transcriptional antiterminator activity.

Trotman JB, Lee DM, Cherney RE, Kim SO, Inoue K, Schertzer MD, Bischoff SR, Cowley DO, Calabrese JM. Trotman JB, et al. Among authors: calabrese jm. Nucleic Acids Res. 2020 Oct 9;48(18):10500-10517. doi: 10.1093/nar/gkaa789. Nucleic Acids Res. 2020. PMID: 32986830 Free PMC article.

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