Biswas A - Search Results

1

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants.

Li M, Oliveira Passos D, Shan Z, Smith SJ, Sun Q, Biswas A, Choudhuri I, Strutzenberg TS, Haldane A, Deng N, Li Z, Zhao XZ, Briganti L, Kvaratskhelia M, Burke TR Jr, Levy RM, Hughes SH, Craigie R, Lyumkis D. Li M, et al. Among authors: biswas a. Sci Adv. 2023 Jul 21;9(29):eadg5953. doi: 10.1126/sciadv.adg5953. Epub 2023 Jul 21. Sci Adv. 2023. PMID: 37478179 Free article.

2

Epistasis and entrenchment of drug resistance in HIV-1 subtype B.

Biswas A, Haldane A, Arnold E, Levy RM. Biswas A, et al. Elife. 2019 Oct 8;8:e50524. doi: 10.7554/eLife.50524. Elife. 2019. PMID: 31591964 Free PMC article.

3

Limits to detecting epistasis in the fitness landscape of HIV.

Biswas A, Haldane A, Levy RM. Biswas A, et al. PLoS One. 2022 Jan 18;17(1):e0262314. doi: 10.1371/journal.pone.0262314. eCollection 2022. PLoS One. 2022. PMID: 35041711 Free PMC article.

4

Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid.

Sun Q, Biswas A, Vijayan RSK, Craveur P, Forli S, Olson AJ, Castaner AE, Kirby KA, Sarafianos SG, Deng N, Levy R. Sun Q, et al. Among authors: biswas a. J Comput Aided Mol Des. 2022 Mar;36(3):193-203. doi: 10.1007/s10822-022-00446-5. Epub 2022 Mar 9. J Comput Aided Mol Des. 2022. PMID: 35262811 Free PMC article.

5

Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins.

Choudhuri I, Biswas A, Haldane A, Levy RM. Choudhuri I, et al. Among authors: biswas a. J Phys Chem B. 2022 Dec 22;126(50):10622-10636. doi: 10.1021/acs.jpcb.2c06123. Epub 2022 Dec 9. J Phys Chem B. 2022. PMID: 36493468 Free PMC article.

6

Elucidating the molecular determinants for binding modes of a third-generation HIV-1 integrase strand transfer inhibitor: Importance of side chain and solvent reorganization.

Sun Q, Biswas A, Lyumkis D, Levy R, Deng N. Sun Q, et al. Among authors: biswas a. bioRxiv [Preprint]. 2023 Dec 1:2023.11.29.569269. doi: 10.1101/2023.11.29.569269. bioRxiv. 2023. PMID: 38077045 Free PMC article. Updated. Preprint.

7

Elucidating the Molecular Determinants of the Binding Modes of a Third-Generation HIV-1 Integrase Strand Transfer Inhibitor: The Importance of Side Chain and Solvent Reorganization.

Sun Q, Biswas A, Lyumkis D, Levy R, Deng N. Sun Q, et al. Among authors: biswas a. Viruses. 2024 Jan 2;16(1):76. doi: 10.3390/v16010076. Viruses. 2024. PMID: 38257776 Free article.

8

Oligomeric HIV-1 Integrase Structures Reveal Functional Plasticity for Intasome Assembly and RNA Binding.

Jing T, Shan Z, Dinh T, Biswas A, Jang S, Greenwood J, Li M, Zhang Z, Gray G, Shin HJ, Zhou B, Passos D, Aiyer S, Li Z, Craigie R, Engelman AN, Kvaratskhelia M, Lyumkis D. Jing T, et al. Among authors: biswas a. bioRxiv [Preprint]. 2024 Jan 27:2024.01.26.577436. doi: 10.1101/2024.01.26.577436. bioRxiv. 2024. PMID: 38328132 Free PMC article. Preprint.

9

Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure.

Biswas A, Choudhuri I, Arnold E, Lyumkis D, Haldane A, Levy RM. Biswas A, et al. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2316662121. doi: 10.1073/pnas.2316662121. Epub 2024 Apr 1. Proc Natl Acad Sci U S A. 2024. PMID: 38557187

10

Sweet potato (Ipomoea batatas L.) genotype selection using advanced indices and statistical models: A multi-year approach.

Alam Z, Akter S, Khan MAH, Hossain MI, Amin MN, Biswas A, Rahaman EHMS, Ali MA, Chanda D, Rahman MHS, Kawochar MA, Alam MS, Molla MM, Islam MM, Jahan MAHS, Prodhan MZH, Kadir MM, Sarker D. Alam Z, et al. Among authors: biswas a. Heliyon. 2024 May 20;10(10):e31569. doi: 10.1016/j.heliyon.2024.e31569. eCollection 2024 May 30. Heliyon. 2024. PMID: 38826716 Free PMC article.

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