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OpenPBTA: The Open Pediatric Brain Tumor Atlas.
Cell Genom. 2023 May 31;3(7):100340. doi: 10.1016/j.xgen.2023.100340. eCollection 2023 Jul 12.
Cell Genom. 2023.
PMID: 37492101
Free PMC article.
The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science.
Lilly JV, Rokita JL, Mason JL, Patton T, Stefankiewiz S, Higgins D, Trooskin G, Larouci CA, Arya K, Appert E, Heath AP, Zhu Y, Brown MA, Zhang B, Farrow BK, Robins S, Morgan AM, Nguyen TQ, Frenkel E, Lehmann K, Drake E, Sullivan C, Plisiewicz A, Coleman N, Patterson L, Koptyra M, Helili Z, Van Kuren N, Young N, Kim MC, Friedman C, Lubneuski A, Blackden C, Williams M, Baubet V, Tauhid L, Galanaugh J, Boucher K, Ijaz H, Cole KA, Choudhari N, Santi M, Moulder RW, Waller J, Rife W, Diskin SJ, Mateos M, Parsons DW, Pollack IF, Goldman S, Leary S, Caporalini C, Buccoliero AM, Scagnet M, Haussler D, Hanson D, Firestein R, Cain J, Phillips JJ, Gupta N, Mueller S, Grant G, Monje-Deisseroth M, Partap S, Greenfield JP, Hashizume R, Smith A, Zhu S, Johnston JM, Fangusaro JR, Miller M, Wood MD, Gardner S, Carter CL, Prolo LM, Pisapia J, Pehlivan K, Franson A, Niazi T, Rubin J, Abdelbaki M, Ziegler DS, Lindsay HB, Stucklin AG, Gerber N, Vaske OM, Quinsey C, Rood BR, Nazarian J, Raabe E, Jackson EM, Stapleton S, Lober RM, Kram DE, Koschmann C, Storm PB, Lulla RR, Prados M, Resnick AC, Waanders AJ.
Lilly JV, et al.
Neoplasia. 2023 Jan;35:100846. doi: 10.1016/j.neo.2022.100846. Epub 2022 Nov 3.
Neoplasia. 2023.
PMID: 36335802
Free PMC article.
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Generation and multi-dimensional profiling of a childhood cancer cell line atlas defines new therapeutic opportunities.
Sun CX, Daniel P, Bradshaw G, Shi H, Loi M, Chew N, Parackal S, Tsui V, Liang Y, Koptyra M, Adjumain S, Sun C, Chong WC, Fernando D, Drinkwater C, Tourchi M, Habarakada D, Sooraj D, Carvalho D, Storm PB, Baubet V, Sayles LC, Fernandez E, Nguyen T, Pörksen M, Doan A, Crombie DE, Panday M, Zhukova N, Dun MD, Ludlow LE, Day B, Stringer BW, Neeman N, Rubens JA, Raabe EH, Vinci M, Tyrrell V, Fletcher JI, Ekert PG, Dumevska B, Ziegler DS, Tsoli M, Syed Sulaiman NF, Loh AHP, Low SYY, Sweet-Cordero EA, Monje M, Resnick A, Jones C, Downie P, Williams B, Rosenbluh J, Gough D, Cain JE, Firestein R.
Sun CX, et al.
Cancer Cell. 2023 Apr 10;41(4):660-677.e7. doi: 10.1016/j.ccell.2023.03.007. Epub 2023 Mar 30.
Cancer Cell. 2023.
PMID: 37001527
Free article.
Item in Clipboard
A metagenomic analysis of the virome of inverted papilloma and squamous cell carcinoma.
Tong CCL, Lin X, Seckar T, Koptyra M, Kohanski MA, Cohen NA, Kennedy DW, Adappa ND, Papagiannopoulos P, Kuan EC, Baranov E, Jalaly JB, Feldman MD, Storm PB, Resnick AC, Palmer JN, Wei Z, Robertson ES.
Tong CCL, et al.
Int Forum Allergy Rhinol. 2023 Nov;13(11):2055-2062. doi: 10.1002/alr.23182. Epub 2023 May 28.
Int Forum Allergy Rhinol. 2023.
PMID: 37189250
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Radiomics for characterization of the glioma immune microenvironment.
Khalili N, Kazerooni AF, Familiar A, Haldar D, Kraya A, Foster J, Koptyra M, Storm PB, Resnick AC, Nabavizadeh A.
Khalili N, et al.
NPJ Precis Oncol. 2023 Jun 19;7(1):59. doi: 10.1038/s41698-023-00413-9.
NPJ Precis Oncol. 2023.
PMID: 37337080
Free PMC article.
Review.
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A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma.
Sussman JH, Oldridge DA, Yu W, Chen CH, Zellmer AM, Rong J, Parvaresh-Rizi A, Thadi A, Xu J, Bandyopadhyay S, Sun Y, Wu D, Emerson Hunter C, Brosius S, Ahn KJ, Baxter AE, Koptyra MP, Vanguri RS, McGrory S, Resnick AC, Storm PB, Amankulor NM, Santi M, Viaene AN, Zhang N, Raedt T, Cole K, Tan K.
Sussman JH, et al. Among authors: koptyra mp.
bioRxiv [Preprint]. 2024 Mar 8:2024.03.06.583588. doi: 10.1101/2024.03.06.583588.
bioRxiv. 2024.
PMID: 38496580
Free PMC article.
Preprint.
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Recent Developments in Blood Biomarkers in Neuro-oncology.
Foster JB, Koptyra MP, Bagley SJ.
Foster JB, et al. Among authors: koptyra mp.
Curr Neurol Neurosci Rep. 2023 Dec;23(12):857-867. doi: 10.1007/s11910-023-01321-y. Epub 2023 Nov 9.
Curr Neurol Neurosci Rep. 2023.
PMID: 37943477
Review.
Item in Clipboard
Informatics Methods and Infrastructure Needed to Study Factors Associated with High Incidence of Pediatric Brain and Central Nervous System Tumors in Kentucky.
Durbin EB, Christian WJ, Hands I, Koptyra MP, Jong JC, Badgett TC.
Durbin EB, et al. Among authors: koptyra mp.
J Registry Manag. 2020 Fall;47(3):127-134.
J Registry Manag. 2020.
PMID: 34128919
Free PMC article.
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