Nakanishi K - Search Results

1

Oligomerization-mediated activation of a short prokaryotic Argonaute.

Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM. Shen Z, et al. Among authors: nakanishi k. Nature. 2023 Sep;621(7977):154-161. doi: 10.1038/s41586-023-06456-z. Epub 2023 Jul 26. Nature. 2023. PMID: 37494956

2

Structure of yeast Argonaute with guide RNA.

Nakanishi K, Weinberg DE, Bartel DP, Patel DJ. Nakanishi K, et al. Nature. 2012 Jun 20;486(7403):368-74. doi: 10.1038/nature11211. Nature. 2012. PMID: 22722195 Free PMC article.

3

The evolutionary journey of Argonaute proteins.

Swarts DC, Makarova K, Wang Y, Nakanishi K, Ketting RF, Koonin EV, Patel DJ, van der Oost J. Swarts DC, et al. Among authors: nakanishi k. Nat Struct Mol Biol. 2014 Sep;21(9):743-53. doi: 10.1038/nsmb.2879. Nat Struct Mol Biol. 2014. PMID: 25192263 Free PMC article. Review.

4

When Argonaute takes out the ribonuclease sword.

Nakanishi K. Nakanishi K. J Biol Chem. 2024 Jan;300(1):105499. doi: 10.1016/j.jbc.2023.105499. Epub 2023 Nov 27. J Biol Chem. 2024. PMID: 38029964 Free PMC article. Review.

5

Cloning and Identification of Recombinant Argonaute-Bound Small RNAs Using Next-Generation Sequencing.

Gangras P, Dayeh DM, Mabin JW, Nakanishi K, Singh G. Gangras P, et al. Among authors: nakanishi k. Methods Mol Biol. 2018;1680:1-28. doi: 10.1007/978-1-4939-7339-2_1. Methods Mol Biol. 2018. PMID: 29030838

6

Structural and functional analyses reveal the contributions of the C- and N-lobes of Argonaute protein to selectivity of RNA target cleavage.

Dayeh DM, Kruithoff BC, Nakanishi K. Dayeh DM, et al. Among authors: nakanishi k. J Biol Chem. 2018 Apr 27;293(17):6308-6325. doi: 10.1074/jbc.RA117.001051. Epub 2018 Mar 8. J Biol Chem. 2018. PMID: 29519815 Free PMC article.

7

Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA.

Dayeh DM, Cantara WA, Kitzrow JP, Musier-Forsyth K, Nakanishi K. Dayeh DM, et al. Among authors: nakanishi k. Nucleic Acids Res. 2018 Sep 19;46(16):e98. doi: 10.1093/nar/gky496. Nucleic Acids Res. 2018. PMID: 29897478 Free PMC article.

8

Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters.

Park MS, Araya-Secchi R, Brackbill JA, Phan HD, Kehling AC, Abd El-Wahab EW, Dayeh DM, Sotomayor M, Nakanishi K. Park MS, et al. Among authors: nakanishi k. Mol Cell. 2019 Aug 22;75(4):725-740.e6. doi: 10.1016/j.molcel.2019.06.011. Epub 2019 Jul 16. Mol Cell. 2019. PMID: 31324450 Free PMC article.

9

Correction to 'Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA'.

Dayeh DM, Cantara WA, Kitzrow JP, Musier-Forsyth K, Nakanishi K. Dayeh DM, et al. Among authors: nakanishi k. Nucleic Acids Res. 2021 Sep 20;49(16):9606. doi: 10.1093/nar/gkab742. Nucleic Acids Res. 2021. PMID: 34403465 Free PMC article. No abstract available.

10

Anatomy of four human Argonaute proteins.

Nakanishi K. Nakanishi K. Nucleic Acids Res. 2022 Jul 8;50(12):6618-6638. doi: 10.1093/nar/gkac519. Nucleic Acids Res. 2022. PMID: 35736234 Free PMC article. Review.

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