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Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.
Proteins. 2023 Dec;91(12):1903-1911. doi: 10.1002/prot.26584. Epub 2023 Oct 23.
Proteins. 2023.
PMID: 37872703
Tertiary structure assessment at CASP15.
Simpkin AJ, Mesdaghi S, Sánchez Rodríguez F, Elliott L, Murphy DL, Kryshtafovych A, Keegan RM, Rigden DJ.
Simpkin AJ, et al. Among authors: mesdaghi s.
Proteins. 2023 Dec;91(12):1616-1635. doi: 10.1002/prot.26593. Epub 2023 Sep 25.
Proteins. 2023.
PMID: 37746927
Free PMC article.
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Deep Learning-based structure modelling illuminates structure and function in uncharted regions of β-solenoid fold space.
Mesdaghi S, Price RM, Madine J, Rigden DJ.
Mesdaghi S, et al.
J Struct Biol. 2023 Sep;215(3):108010. doi: 10.1016/j.jsb.2023.108010. Epub 2023 Aug 6.
J Struct Biol. 2023.
PMID: 37544372
Free article.
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Structural insights into pink-eyed dilution protein (Oca2).
Mesdaghi S, Murphy DL, Simpkin AJ, Rigden DJ.
Mesdaghi S, et al.
Biosci Rep. 2023 Jul 26;43(7):BSR20230060. doi: 10.1042/BSR20230060.
Biosci Rep. 2023.
PMID: 37431738
Free PMC article.
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ConPlot: web-based application for the visualization of protein contact maps integrated with other data.
Sánchez Rodríguez F, Mesdaghi S, Simpkin AJ, Burgos-Mármol JJ, Murphy DL, Uski V, Keegan RM, Rigden DJ.
Sánchez Rodríguez F, et al. Among authors: mesdaghi s.
Bioinformatics. 2021 Sep 9;37(17):2763-2765. doi: 10.1093/bioinformatics/btab049.
Bioinformatics. 2021.
PMID: 34499718
Free PMC article.
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Evaluation of model refinement in CASP14.
Simpkin AJ, Sánchez Rodríguez F, Mesdaghi S, Kryshtafovych A, Rigden DJ.
Simpkin AJ, et al. Among authors: mesdaghi s.
Proteins. 2021 Dec;89(12):1852-1869. doi: 10.1002/prot.26185. Epub 2021 Jul 29.
Proteins. 2021.
PMID: 34288138
Free PMC article.
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In silico prediction of structure and function for a large family of transmembrane proteins that includes human Tmem41b.
Mesdaghi S, Murphy DL, Sánchez Rodríguez F, Burgos-Mármol JJ, Rigden DJ.
Mesdaghi S, et al.
F1000Res. 2020 Dec 3;9:1395. doi: 10.12688/f1000research.27676.2. eCollection 2020.
F1000Res. 2020.
PMID: 33520197
Free PMC article.
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