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BEERS2: RNA-Seq simulation through high fidelity in silico modeling.
Brooks TG, Lahens NF, Mrčela A, Sarantopoulou D, Nayak S, Naik A, Sengupta S, Choi PS, Grant GR. Brooks TG, et al. Among authors: sarantopoulou d. Brief Bioinform. 2024 Mar 27;25(3):bbae164. doi: 10.1093/bib/bbae164. Brief Bioinform. 2024. PMID: 38605641 Free PMC article.
Epigenetic signature of human immune aging in the GESTALT study.
Roy R, Kuo PL, Candia J, Sarantopoulou D, Ubaida-Mohien C, Hernandez D, Kaileh M, Arepalli S, Singh A, Bektas A, Kim J, Moore AZ, Tanaka T, McKelvey J, Zukley L, Nguyen C, Wallace T, Dunn C, Wood W, Piao Y, Coletta C, De S, Sen J, Weng NP, Sen R, Ferrucci L. Roy R, et al. Among authors: sarantopoulou d. Elife. 2023 Aug 17;12:e86136. doi: 10.7554/eLife.86136. Elife. 2023. PMID: 37589453 Free PMC article.
Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet.
Anderson ST, Meng H, Brooks TG, Tang SY, Lordan R, Sengupta A, Nayak S, Mřela A, Sarantopoulou D, Lahens NF, Weljie A, Grant GR, Bushman FD, FitzGerald GA. Anderson ST, et al. Among authors: sarantopoulou d. Sci Transl Med. 2023 May 17;15(696):eabo2022. doi: 10.1126/scitranslmed.abo2022. Epub 2023 May 17. Sci Transl Med. 2023. PMID: 37196066
BEERS2: RNA-Seq simulation through high fidelity in silico modeling.
Brooks TG, Lahens NF, Mrčela A, Sarantopoulou D, Nayak S, Naik A, Sengupta S, Choi PS, Grant GR. Brooks TG, et al. Among authors: sarantopoulou d. bioRxiv [Preprint]. 2023 Apr 24:2023.04.21.537847. doi: 10.1101/2023.04.21.537847. bioRxiv. 2023. PMID: 37162982 Free PMC article. Updated. Preprint.
DNA methylation signatures reveal that distinct combinations of transcription factors specify human immune cell epigenetic identity.
Roy R, Ramamoorthy S, Shapiro BD, Kaileh M, Hernandez D, Sarantopoulou D, Arepalli S, Boller SR, Singh A, Bektas A, Kim J, Moore AZ, Tanaka T, McKelvey J, Zukley L, Nguyen C, Wallace T, Dunn C, Wersto R, Wood W, Piao Y, Becker KG, Coletta C, De S, Sen JM, Battle A, Weng NP, Grosschedl R, Ferrucci L, Sen R. Roy R, et al. Among authors: sarantopoulou d. Immunity. 2022 Jun 14;55(6):1135. doi: 10.1016/j.immuni.2022.05.006. Immunity. 2022. PMID: 35704994 No abstract available.
Hidden neural networks for transmembrane protein topology prediction.
Tamposis IA, Sarantopoulou D, Theodoropoulou MC, Stasi EA, Kontou PI, Tsirigos KD, Bagos PG. Tamposis IA, et al. Among authors: sarantopoulou d. Comput Struct Biotechnol J. 2021 Nov 8;19:6090-6097. doi: 10.1016/j.csbj.2021.11.006. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849210 Free PMC article.
DNA methylation signatures reveal that distinct combinations of transcription factors specify human immune cell epigenetic identity.
Roy R, Ramamoorthy S, Shapiro BD, Kaileh M, Hernandez D, Sarantopoulou D, Arepalli S, Boller S, Singh A, Bektas A, Kim J, Moore AZ, Tanaka T, McKelvey J, Zukley L, Nguyen C, Wallace T, Dunn C, Wersto R, Wood W, Piao Y, Becker KG, Coletta C, De S, Sen JM, Battle A, Weng NP, Grosschedl R, Ferrucci L, Sen R. Roy R, et al. Among authors: sarantopoulou d. Immunity. 2021 Nov 9;54(11):2465-2480.e5. doi: 10.1016/j.immuni.2021.10.001. Epub 2021 Oct 26. Immunity. 2021. PMID: 34706222 Free PMC article.
CAMPAREE: a robust and configurable RNA expression simulator.
Lahens NF, Brooks TG, Sarantopoulou D, Nayak S, Lawrence C, Mrčela A, Srinivasan A, Schug J, Hogenesch JB, Barash Y, Grant GR. Lahens NF, et al. Among authors: sarantopoulou d. BMC Genomics. 2021 Sep 25;22(1):692. doi: 10.1186/s12864-021-07934-2. BMC Genomics. 2021. PMID: 34563123 Free PMC article.
17 results