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Page 1
Neural ADMIXTURE for rapid genomic clustering.
Mantes AD, Montserrat DM, Bustamante CD, Giró-I-Nieto X, Ioannidis AG. Mantes AD, et al. Among authors: ioannidis ag. Nat Comput Sci. 2023 Jul;3(7):621-629. doi: 10.1038/s43588-023-00482-7. Epub 2023 Jul 6. Nat Comput Sci. 2023. PMID: 37600116 Free PMC article.
Native American gene flow into Polynesia predating Easter Island settlement.
Ioannidis AG, Blanco-Portillo J, Sandoval K, Hagelberg E, Miquel-Poblete JF, Moreno-Mayar JV, Rodríguez-Rodríguez JE, Quinto-Cortés CD, Auckland K, Parks T, Robson K, Hill AVS, Avila-Arcos MC, Sockell A, Homburger JR, Wojcik GL, Barnes KC, Herrera L, Berríos S, Acuña M, Llop E, Eng C, Huntsman S, Burchard EG, Gignoux CR, Cifuentes L, Verdugo RA, Moraga M, Mentzer AJ, Bustamante CD, Moreno-Estrada A. Ioannidis AG, et al. Nature. 2020 Jul;583(7817):572-577. doi: 10.1038/s41586-020-2487-2. Epub 2020 Jul 8. Nature. 2020. PMID: 32641827 Free PMC article.
Paths and timings of the peopling of Polynesia inferred from genomic networks.
Ioannidis AG, Blanco-Portillo J, Sandoval K, Hagelberg E, Barberena-Jonas C, Hill AVS, Rodríguez-Rodríguez JE, Fox K, Robson K, Haoa-Cardinali S, Quinto-Cortés CD, Miquel-Poblete JF, Auckland K, Parks T, Sofro ASM, Ávila-Arcos MC, Sockell A, Homburger JR, Eng C, Huntsman S, Burchard EG, Gignoux CR, Verdugo RA, Moraga M, Bustamante CD, Mentzer AJ, Moreno-Estrada A. Ioannidis AG, et al. Nature. 2021 Sep;597(7877):522-526. doi: 10.1038/s41586-021-03902-8. Epub 2021 Sep 22. Nature. 2021. PMID: 34552258 Free PMC article.
Bayesian model comparison for rare-variant association studies.
Venkataraman GR, DeBoever C, Tanigawa Y, Aguirre M, Ioannidis AG, Mostafavi H, Spencer CCA, Poterba T, Bustamante CD, Daly MJ, Pirinen M, Rivas MA. Venkataraman GR, et al. Among authors: ioannidis ag. Am J Hum Genet. 2021 Dec 2;108(12):2354-2367. doi: 10.1016/j.ajhg.2021.11.005. Epub 2021 Nov 24. Am J Hum Genet. 2021. PMID: 34822764 Free PMC article.
Ancient DNA reveals five streams of migration into Micronesia and matrilocality in early Pacific seafarers.
Liu YC, Hunter-Anderson R, Cheronet O, Eakin J, Camacho F, Pietrusewsky M, Rohland N, Ioannidis A, Athens JS, Douglas MT, Ikehara-Quebral RM, Bernardos R, Culleton BJ, Mah M, Adamski N, Broomandkhoshbacht N, Callan K, Lawson AM, Mandl K, Michel M, Oppenheimer J, Stewardson K, Zalzala F, Kidd K, Kidd J, Schurr TG, Auckland K, Hill AVS, Mentzer AJ, Quinto-Cortés CD, Robson K, Kennett DJ, Patterson N, Bustamante CD, Moreno-Estrada A, Spriggs M, Vilar M, Lipson M, Pinhasi R, Reich D. Liu YC, et al. Science. 2022 Jul;377(6601):72-79. doi: 10.1126/science.abm6536. Epub 2022 Jun 30. Science. 2022. PMID: 35771911 Free PMC article.
Archetypal Analysis for population genetics.
Gimbernat-Mayol J, Dominguez Mantes A, Bustamante CD, Mas Montserrat D, Ioannidis AG. Gimbernat-Mayol J, et al. Among authors: ioannidis ag. PLoS Comput Biol. 2022 Aug 25;18(8):e1010301. doi: 10.1371/journal.pcbi.1010301. eCollection 2022 Aug. PLoS Comput Biol. 2022. PMID: 36007005 Free PMC article.
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy.
Parikh VN, Ioannidis AG, Jimenez-Morales D, Gorzynski JE, De Jong HN, Liu X, Roque J, Cepeda-Espinoza VP, Osoegawa K, Hughes C, Sutton SC, Youlton N, Joshi R, Amar D, Tanigawa Y, Russo D, Wong J, Lauzon JT, Edelson J, Mas Montserrat D, Kwon Y, Rubinacci S, Delaneau O, Cappello L, Kim J, Shoura MJ, Raja AN, Watson N, Hammond N, Spiteri E, Mallempati KC, Montero-Martín G, Christle J, Kim J, Kirillova A, Seo K, Huang Y, Zhao C, Moreno-Grau S, Hershman SG, Dalton KP, Zhen J, Kamm J, Bhatt KD, Isakova A, Morri M, Ranganath T, Blish CA, Rogers AJ, Nadeau K, Yang S, Blomkalns A, O'Hara R, Neff NF, DeBoever C, Szalma S, Wheeler MT, Gates CM, Farh K, Schroth GP, Febbo P, deSouza F, Cornejo OE, Fernandez-Vina M, Kistler A, Palacios JA, Pinsky BA, Bustamante CD, Rivas MA, Ashley EA. Parikh VN, et al. Among authors: ioannidis ag. Nat Commun. 2022 Aug 30;13(1):5107. doi: 10.1038/s41467-022-32397-8. Nat Commun. 2022. PMID: 36042219 Free PMC article.
Validating and automating learning of cardiometabolic polygenic risk scores from direct-to-consumer genetic and phenotypic data: implications for scaling precision health research.
Lopez-Pineda A, Vernekar M, Moreno-Grau S, Rojas-Muñoz A, Moatamed B, Lee MTM, Nava-Aguilar MA, Gonzalez-Arroyo G, Numakura K, Matsuda Y, Ioannidis A, Katsanis N, Takano T, Bustamante CD. Lopez-Pineda A, et al. Hum Genomics. 2022 Sep 8;16(1):37. doi: 10.1186/s40246-022-00406-y. Hum Genomics. 2022. PMID: 36076307 Free PMC article.
Predicting Dog Phenotypes from Genotypes.
Bartusiak ER, Barrabes M, Rymbekova A, Gimbernat-Mayol J, Lopez C, Barberis L, Montserrat DM, Giro-I-Nieto X, Ioannidis AG. Bartusiak ER, et al. Among authors: ioannidis ag. Annu Int Conf IEEE Eng Med Biol Soc. 2022 Jul;2022:3558-3562. doi: 10.1109/EMBC48229.2022.9870905. Annu Int Conf IEEE Eng Med Biol Soc. 2022. PMID: 36085664
30 results