Love MI - Search Results

1

Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features.

Bond ML, Davis ES, Quiroga IY, Dey A, Kiran M, Love MI, Won H, Phanstiel DH. Bond ML, et al. Among authors: love mi. Genome Res. 2023 Aug;33(8):1258-1268. doi: 10.1101/gr.277397.122. Epub 2023 Sep 12. Genome Res. 2023. PMID: 37699658 Free PMC article.

2

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development.

Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MS, Machol I, Love MI, Aiden EL, Bassik MC, Snyder MP. Phanstiel DH, et al. Among authors: love mi. Mol Cell. 2017 Sep 21;67(6):1037-1048.e6. doi: 10.1016/j.molcel.2017.08.006. Epub 2017 Sep 7. Mol Cell. 2017. PMID: 28890333 Free PMC article.

3

Plotgardener: cultivating precise multi-panel figures in R.

Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Among authors: love mi. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.

4

Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription.

Reed KSM, Davis ES, Bond ML, Cabrera A, Thulson E, Quiroga IY, Cassel S, Woolery KT, Hilton I, Won H, Love MI, Phanstiel DH. Reed KSM, et al. Among authors: love mi. Cell Rep. 2022 Nov 1;41(5):111567. doi: 10.1016/j.celrep.2022.111567. Cell Rep. 2022. PMID: 36323252 Free PMC article.

5

CTCF: an R/bioconductor data package of human and mouse CTCF binding sites.

Dozmorov MG, Mu W, Davis ES, Lee S, Triche TJ Jr, Phanstiel DH, Love MI. Dozmorov MG, et al. Among authors: love mi. Bioinform Adv. 2022 Dec 16;2(1):vbac097. doi: 10.1093/bioadv/vbac097. eCollection 2022. Bioinform Adv. 2022. PMID: 36699364 Free PMC article.

6

Wnt activity reveals context-specific genetic effects on gene regulation in neural progenitors.

Matoba N, Le BD, Valone JM, Wolter JM, Mory J, Liang D, Aygün N, Broadaway KA, Bond ML, Mohlke KL, Zylka MJ, Love MI, Stein JL. Matoba N, et al. Among authors: love mi. bioRxiv [Preprint]. 2023 Apr 19:2023.02.07.527357. doi: 10.1101/2023.02.07.527357. bioRxiv. 2023. PMID: 36798360 Free PMC article. Preprint.

7

bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing.

Mu W, Davis ES, Lee S, Dozmorov MG, Phanstiel DH, Love MI. Mu W, et al. Among authors: love mi. Bioinformatics. 2023 May 4;39(5):btad190. doi: 10.1093/bioinformatics/btad190. Bioinformatics. 2023. PMID: 37042725 Free PMC article.

8

excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies.

Ogata JD, Mu W, Davis ES, Xue B, Harrell JC, Sheffield NC, Phanstiel DH, Love MI, Dozmorov MG. Ogata JD, et al. Among authors: love mi. Bioinformatics. 2023 Apr 3;39(4):btad198. doi: 10.1093/bioinformatics/btad198. Bioinformatics. 2023. PMID: 37067481 Free PMC article.

9

matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling.

Davis ES, Mu W, Lee S, Dozmorov MG, Love MI, Phanstiel DH. Davis ES, et al. Among authors: love mi. Bioinformatics. 2023 May 4;39(5):btad197. doi: 10.1093/bioinformatics/btad197. Bioinformatics. 2023. PMID: 37084270 Free PMC article.

10

Inferring cell-type-specific causal gene regulatory networks during human neurogenesis.

Aygün N, Liang D, Crouse WL, Keele GR, Love MI, Stein JL. Aygün N, et al. Among authors: love mi. Genome Biol. 2023 May 30;24(1):130. doi: 10.1186/s13059-023-02959-0. Genome Biol. 2023. PMID: 37254169 Free PMC article.

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