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Sensing their plasma membrane curvature allows migrating cells to circumvent obstacles.
Sitarska E, Almeida SD, Beckwith MS, Stopp J, Czuchnowski J, Siggel M, Roessner R, Tschanz A, Ejsing C, Schwab Y, Kosinski J, Sixt M, Kreshuk A, Erzberger A, Diz-Muñoz A. Sitarska E, et al. Among authors: kreshuk a. Nat Commun. 2023 Sep 13;14(1):5644. doi: 10.1038/s41467-023-41173-1. Nat Commun. 2023. PMID: 37704612 Free PMC article.
Convolutional networks for supervised mining of molecular patterns within cellular context.
de Teresa-Trueba I, Goetz SK, Mattausch A, Stojanovska F, Zimmerli CE, Toro-Nahuelpan M, Cheng DWC, Tollervey F, Pape C, Beck M, Diz-Muñoz A, Kreshuk A, Mahamid J, Zaugg JB. de Teresa-Trueba I, et al. Among authors: kreshuk a. Nat Methods. 2023 Feb;20(2):284-294. doi: 10.1038/s41592-022-01746-2. Epub 2023 Jan 23. Nat Methods. 2023. PMID: 36690741 Free PMC article.
Volume electron microscopy.
Peddie CJ, Genoud C, Kreshuk A, Meechan K, Micheva KD, Narayan K, Pape C, Parton RG, Schieber NL, Schwab Y, Titze B, Verkade P, Aubrey A, Collinson LM. Peddie CJ, et al. Among authors: kreshuk a. Nat Rev Methods Primers. 2022 Jul 7;2:51. doi: 10.1038/s43586-022-00131-9. Nat Rev Methods Primers. 2022. PMID: 37409324 Free PMC article.
Embryo-uterine interaction coordinates mouse embryogenesis during implantation.
Bondarenko V, Nikolaev M, Kromm D, Belousov R, Wolny A, Blotenburg M, Zeller P, Rezakhani S, Hugger J, Uhlmann V, Hufnagel L, Kreshuk A, Ellenberg J, van Oudenaarden A, Erzberger A, Lutolf MP, Hiiragi T. Bondarenko V, et al. Among authors: kreshuk a. EMBO J. 2023 Sep 4;42(17):e113280. doi: 10.15252/embj.2022113280. Epub 2023 Jul 31. EMBO J. 2023. PMID: 37522872 Free PMC article.
Whole-body integration of gene expression and single-cell morphology.
Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D. Vergara HM, et al. Among authors: kreshuk a. Cell. 2021 Sep 2;184(18):4819-4837.e22. doi: 10.1016/j.cell.2021.07.017. Epub 2021 Aug 10. Cell. 2021. PMID: 34380046 Free PMC article.
Deep learning-enhanced light-field imaging with continuous validation.
Wagner N, Beuttenmueller F, Norlin N, Gierten J, Boffi JC, Wittbrodt J, Weigert M, Hufnagel L, Prevedel R, Kreshuk A. Wagner N, et al. Among authors: kreshuk a. Nat Methods. 2021 May;18(5):557-563. doi: 10.1038/s41592-021-01136-0. Epub 2021 May 7. Nat Methods. 2021. PMID: 33963344
Universal autofocus for quantitative volumetric microscopy of whole mouse brains.
Silvestri L, Müllenbroich MC, Costantini I, Di Giovanna AP, Mazzamuto G, Franceschini A, Kutra D, Kreshuk A, Checcucci C, Toresano LO, Frasconi P, Sacconi L, Pavone FS. Silvestri L, et al. Among authors: kreshuk a. Nat Methods. 2021 Aug;18(8):953-958. doi: 10.1038/s41592-021-01208-1. Epub 2021 Jul 26. Nat Methods. 2021. PMID: 34312564 Free article.
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution.
Musser JM, Schippers KJ, Nickel M, Mizzon G, Kohn AB, Pape C, Ronchi P, Papadopoulos N, Tarashansky AJ, Hammel JU, Wolf F, Liang C, Hernández-Plaza A, Cantalapiedra CP, Achim K, Schieber NL, Pan L, Ruperti F, Francis WR, Vargas S, Kling S, Renkert M, Polikarpov M, Bourenkov G, Feuda R, Gaspar I, Burkhardt P, Wang B, Bork P, Beck M, Schneider TR, Kreshuk A, Wörheide G, Huerta-Cepas J, Schwab Y, Moroz LL, Arendt D. Musser JM, et al. Among authors: kreshuk a. Science. 2021 Nov 5;374(6568):717-723. doi: 10.1126/science.abj2949. Epub 2021 Nov 4. Science. 2021. PMID: 34735222 Free PMC article.
37 results