Yajima M - Search Results

1

Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM.

O'Neill NK, Stein TD, Hu J, Rehman H, Campbell JD, Yajima M, Zhang X, Farrer LA. O'Neill NK, et al. Among authors: yajima m. BMC Bioinformatics. 2023 Sep 19;24(1):349. doi: 10.1186/s12859-023-05476-w. BMC Bioinformatics. 2023. PMID: 37726653 Free PMC article.

2

Decontamination of ambient RNA in single-cell RNA-seq with DecontX.

Yang S, Corbett SE, Koga Y, Wang Z, Johnson WE, Yajima M, Campbell JD. Yang S, et al. Among authors: yajima m. Genome Biol. 2020 Mar 5;21(1):57. doi: 10.1186/s13059-020-1950-6. Genome Biol. 2020. PMID: 32138770 Free PMC article.

3

Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data.

Wang Z, Yang S, Koga Y, Corbett SE, Shea CV, Johnson WE, Yajima M, Campbell JD. Wang Z, et al. Among authors: yajima m. NAR Genom Bioinform. 2022 Sep 13;4(3):lqac066. doi: 10.1093/nargab/lqac066. eCollection 2022 Sep. NAR Genom Bioinform. 2022. PMID: 36110899 Free PMC article.

4

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data.

Hong R, Koga Y, Bandyadka S, Leshchyk A, Wang Y, Akavoor V, Cao X, Sarfraz I, Wang Z, Alabdullatif S, Jansen F, Yajima M, Johnson WE, Campbell JD. Hong R, et al. Among authors: yajima m. Nat Commun. 2022 Mar 30;13(1):1688. doi: 10.1038/s41467-022-29212-9. Nat Commun. 2022. PMID: 35354805 Free PMC article.

5

Interactive analysis of single-cell data using flexible workflows with SCTK2.

Wang Y, Sarfraz I, Pervaiz N, Hong R, Koga Y, Akavoor V, Cao X, Alabdullatif S, Zaib SA, Wang Z, Jansen F, Yajima M, Johnson WE, Campbell JD. Wang Y, et al. Among authors: yajima m. Patterns (N Y). 2023 Aug 3;4(8):100814. doi: 10.1016/j.patter.2023.100814. eCollection 2023 Aug 11. Patterns (N Y). 2023. PMID: 37602214 Free PMC article.

6

The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the Discovery, Prediction, and Exploration of Mutational Signatures.

Chevalier A, Yang S, Khurshid Z, Sahelijo N, Tong T, Huggins JH, Yajima M, Campbell JD. Chevalier A, et al. Among authors: yajima m. Cancer Res. 2021 Dec 1;81(23):5813-5817. doi: 10.1158/0008-5472.CAN-21-0899. Epub 2021 Oct 8. Cancer Res. 2021. PMID: 34625425 Free PMC article.

7

Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program.

Karagiannis TT, Cleary JP Jr, Gok B, Henderson AJ, Martin NG, Yajima M, Nelson EC, Cheng CS. Karagiannis TT, et al. Among authors: yajima m. Nat Commun. 2020 May 26;11(1):2611. doi: 10.1038/s41467-020-16159-y. Nat Commun. 2020. PMID: 32457298 Free PMC article.

8

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R. Finak G, et al. Among authors: yajima m. Genome Biol. 2015 Dec 10;16:278. doi: 10.1186/s13059-015-0844-5. Genome Biol. 2015. PMID: 26653891 Free PMC article.

9

Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy.

Sheih A, Voillet V, Hanafi LA, DeBerg HA, Yajima M, Hawkins R, Gersuk V, Riddell SR, Maloney DG, Wohlfahrt ME, Pande D, Enstrom MR, Kiem HP, Adair JE, Gottardo R, Linsley PS, Turtle CJ. Sheih A, et al. Among authors: yajima m. Nat Commun. 2020 Jan 10;11(1):219. doi: 10.1038/s41467-019-13880-1. Nat Commun. 2020. PMID: 31924795 Free PMC article. Clinical Trial.

10

PKC downregulation upon rapamycin treatment attenuates mitochondrial disease.

Martin-Perez M, Grillo AS, Ito TK, Valente AS, Han J, Entwisle SW, Huang HZ, Kim D, Yajima M, Kaeberlein M, Villén J. Martin-Perez M, et al. Among authors: yajima m. Nat Metab. 2020 Dec;2(12):1472-1481. doi: 10.1038/s42255-020-00319-x. Epub 2020 Dec 14. Nat Metab. 2020. PMID: 33324011 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

324 results

Search Page