Bulyk ML - Search Results

1

Altered binding affinity of SIX1-Q177R correlates with enhanced WNT5A and WNT pathway effector expression in Wilms tumor.

Stevenson MJ, Phanor SK, Patel U, Gisselbrecht SS, Bulyk ML, O'Brien LL. Stevenson MJ, et al. Among authors: bulyk ml. Dis Model Mech. 2023 Nov 1;16(11):dmm050208. doi: 10.1242/dmm.050208. Epub 2023 Nov 17. Dis Model Mech. 2023. PMID: 37815464 Free PMC article.

2

Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example.

Alibés A, Nadra AD, De Masi F, Bulyk ML, Serrano L, Stricher F. Alibés A, et al. Among authors: bulyk ml. Nucleic Acids Res. 2010 Nov;38(21):7422-31. doi: 10.1093/nar/gkq683. Epub 2010 Aug 4. Nucleic Acids Res. 2010. PMID: 20685816 Free PMC article.

3

Predicting the binding preference of transcription factors to individual DNA k-mers.

Alleyne TM, Peña-Castillo L, Badis G, Talukder S, Berger MF, Gehrke AR, Philippakis AA, Bulyk ML, Morris QD, Hughes TR. Alleyne TM, et al. Among authors: bulyk ml. Bioinformatics. 2009 Apr 15;25(8):1012-8. doi: 10.1093/bioinformatics/btn645. Epub 2008 Dec 16. Bioinformatics. 2009. PMID: 19088121 Free PMC article.

4

Specific DNA-binding by apicomplexan AP2 transcription factors.

De Silva EK, Gehrke AR, Olszewski K, León I, Chahal JS, Bulyk ML, Llinás M. De Silva EK, et al. Among authors: bulyk ml. Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8393-8. doi: 10.1073/pnas.0801993105. Epub 2008 Jun 9. Proc Natl Acad Sci U S A. 2008. PMID: 18541913 Free PMC article.

5

Biological code breaking in the 21st century.

Michelson AM, Bulyk ML. Michelson AM, et al. Among authors: bulyk ml. Mol Syst Biol. 2006;2:2006.0018. doi: 10.1038/msb4100062. Epub 2006 May 2. Mol Syst Biol. 2006. PMID: 16738563 Free PMC article. No abstract available.

6

Additivity in protein-DNA interactions: how good an approximation is it?

Benos PV, Bulyk ML, Stormo GD. Benos PV, et al. Among authors: bulyk ml. Nucleic Acids Res. 2002 Oct 15;30(20):4442-51. doi: 10.1093/nar/gkf578. Nucleic Acids Res. 2002. PMID: 12384591 Free PMC article.

7

The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters.

Pompeani AJ, Irgon JJ, Berger MF, Bulyk ML, Wingreen NS, Bassler BL. Pompeani AJ, et al. Among authors: bulyk ml. Mol Microbiol. 2008 Oct;70(1):76-88. doi: 10.1111/j.1365-2958.2008.06389.x. Epub 2008 Aug 4. Mol Microbiol. 2008. PMID: 18681939 Free PMC article.

8

Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs.

Giorgetti L, Siggers T, Tiana G, Caprara G, Notarbartolo S, Corona T, Pasparakis M, Milani P, Bulyk ML, Natoli G. Giorgetti L, et al. Among authors: bulyk ml. Mol Cell. 2010 Feb 12;37(3):418-28. doi: 10.1016/j.molcel.2010.01.016. Mol Cell. 2010. PMID: 20159560 Free article.

9

Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits.

Wong D, Teixeira A, Oikonomopoulos S, Humburg P, Lone IN, Saliba D, Siggers T, Bulyk M, Angelov D, Dimitrov S, Udalova IA, Ragoussis J. Wong D, et al. Genome Biol. 2011 Jul 29;12(7):R70. doi: 10.1186/gb-2011-12-7-r70. Genome Biol. 2011. PMID: 21801342 Free PMC article.

10

Transcriptional regulation and stabilization of left-right neuronal identity in C. elegans.

Lesch BJ, Gehrke AR, Bulyk ML, Bargmann CI. Lesch BJ, et al. Among authors: bulyk ml. Genes Dev. 2009 Feb 1;23(3):345-58. doi: 10.1101/gad.1763509. Genes Dev. 2009. PMID: 19204119 Free PMC article.

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