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Predictive analyses of regulatory sequences with EUGENe.
Nat Comput Sci. 2023 Nov;3(11):946-956. doi: 10.1038/s43588-023-00544-w. Epub 2023 Nov 16.
Nat Comput Sci. 2023.
PMID: 38177592
Free PMC article.
Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development.
Jindal GA, Bantle AT, Solvason JJ, Grudzien JL, D'Antonio-Chronowska A, Lim F, Le SH, Song BP, Ragsac MF, Klie A, Larsen RO, Frazer KA, Farley EK.
Jindal GA, et al. Among authors: klie a.
Dev Cell. 2023 Nov 6;58(21):2206-2216.e5. doi: 10.1016/j.devcel.2023.09.005. Epub 2023 Oct 16.
Dev Cell. 2023.
PMID: 37848026
Free article.
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Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains.
Goudarzi S, Pagadala M, Klie A, Talwar JV, Carter H.
Goudarzi S, et al. Among authors: klie a.
bioRxiv [Preprint]. 2023 Jul 7:2023.07.04.547722. doi: 10.1101/2023.07.04.547722.
bioRxiv. 2023.
PMID: 37461500
Free PMC article.
Preprint.
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Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.
Klie A, Tsui BY, Mollah S, Skola D, Dow M, Hsu CN, Carter H.
Klie A, et al.
Database (Oxford). 2021 Apr 29;2021:baab021. doi: 10.1093/database/baab021.
Database (Oxford). 2021.
PMID: 33914028
Free PMC article.
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Predicting Mortality in Critical Care Patients with Fungemia Using Structured and Unstructured Data.
Baxter SL, Klie AR, Saseendrakumar BR, Ye GY, Hogarth M, Nemati S.
Baxter SL, et al. Among authors: klie ar.
Annu Int Conf IEEE Eng Med Biol Soc. 2020 Jul;2020:5459-5463. doi: 10.1109/EMBC44109.2020.9175287.
Annu Int Conf IEEE Eng Med Biol Soc. 2020.
PMID: 33019215
Free PMC article.
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Text Processing for Detection of Fungal Ocular Involvement in Critical Care Patients: Cross-Sectional Study.
Baxter SL, Klie AR, Radha Saseendrakumar B, Ye GY, Hogarth M.
Baxter SL, et al. Among authors: klie ar.
J Med Internet Res. 2020 Aug 14;22(8):e18855. doi: 10.2196/18855.
J Med Internet Res. 2020.
PMID: 32795984
Free PMC article.
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An anatomical investigation of the cervicothoracic ganglion.
Marcer N, Bergmann M, Klie A, Moor B, Djonov V.
Marcer N, et al. Among authors: klie a.
Clin Anat. 2012 May;25(4):444-51. doi: 10.1002/ca.21266. Epub 2011 Aug 30.
Clin Anat. 2012.
PMID: 22488995
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