Swaney DL - Search Results

1

High-throughput chemogenetic drug screening reveals PKC-RhoA/PKN as a targetable signaling vulnerability in GNAQ-driven uveal melanoma.

Arang N, Lubrano S, Ceribelli M, Rigiracciolo DC, Saddawi-Konefka R, Faraji F, Ramirez SI, Kim D, Tosto FA, Stevenson E, Zhou Y, Wang Z, Bogomolovas J, Molinolo AA, Swaney DL, Krogan NJ, Yang J, Coma S, Pachter JA, Aplin AE, Alessi DR, Thomas CJ, Gutkind JS. Arang N, et al. Among authors: swaney dl. Cell Rep Med. 2023 Nov 21;4(11):101244. doi: 10.1016/j.xcrm.2023.101244. Epub 2023 Oct 18. Cell Rep Med. 2023. PMID: 37858338 Free PMC article.

2

Phosphoproteomics for the masses.

Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Grimsrud PA, et al. Among authors: swaney dl. ACS Chem Biol. 2010 Jan 15;5(1):105-19. doi: 10.1021/cb900277e. ACS Chem Biol. 2010. PMID: 20047291 Free PMC article. Review.

3

E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis.

Pruneda JN, Smith FD, Daurie A, Swaney DL, Villén J, Scott JD, Stadnyk AW, Le Trong I, Stenkamp RE, Klevit RE, Rohde JR, Brzovic PS. Pruneda JN, et al. Among authors: swaney dl. EMBO J. 2014 Mar 3;33(5):437-49. doi: 10.1002/embj.201386386. Epub 2014 Jan 20. EMBO J. 2014. PMID: 24446487 Free PMC article.

4

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

McAlister GC, Berggren WT, Griep-Raming J, Horning S, Makarov A, Phanstiel D, Stafford G, Swaney DL, Syka JE, Zabrouskov V, Coon JJ. McAlister GC, et al. Among authors: swaney dl. J Proteome Res. 2008 Aug;7(8):3127-36. doi: 10.1021/pr800264t. Epub 2008 Jul 10. J Proteome Res. 2008. PMID: 18613715 Free PMC article.

5

Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex.

Helmlinger D, Marguerat S, Villén J, Swaney DL, Gygi SP, Bähler J, Winston F. Helmlinger D, et al. Among authors: swaney dl. EMBO J. 2011 Jun 3;30(14):2843-52. doi: 10.1038/emboj.2011.181. EMBO J. 2011. PMID: 21642955 Free PMC article.

6

Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.

Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC. Khidekel N, et al. Among authors: swaney dl. Nat Chem Biol. 2007 Jun;3(6):339-48. doi: 10.1038/nchembio881. Epub 2007 May 13. Nat Chem Biol. 2007. PMID: 17496889

7

Enrichment of Phosphopeptides via Immobilized Metal Affinity Chromatography.

Swaney DL, Villén J. Swaney DL, et al. Cold Spring Harb Protoc. 2016 Mar 1;2016(3):pdb.prot088005. doi: 10.1101/pdb.prot088005. Cold Spring Harb Protoc. 2016. PMID: 26933247

8

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors.

Swaney DL, McAlister GC, Wirtala M, Schwartz JC, Syka JE, Coon JJ. Swaney DL, et al. Anal Chem. 2007 Jan 15;79(2):477-85. doi: 10.1021/ac061457f. Anal Chem. 2007. PMID: 17222010 Free PMC article.

9

Decision tree-driven tandem mass spectrometry for shotgun proteomics.

Swaney DL, McAlister GC, Coon JJ. Swaney DL, et al. Nat Methods. 2008 Nov;5(11):959-64. doi: 10.1038/nmeth.1260. Epub 2008 Oct 19. Nat Methods. 2008. PMID: 18931669 Free PMC article.

10

Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Phanstiel DH, et al. Among authors: swaney dl. Nat Methods. 2011 Sep 11;8(10):821-7. doi: 10.1038/nmeth.1699. Nat Methods. 2011. PMID: 21983960 Free PMC article.

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