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METLIN-CCS: an ion mobility spectrometry collision cross section database.
Baker ES, Hoang C, Uritboonthai W, Heyman HM, Pratt B, MacCoss M, MacLean B, Plumb R, Aisporna A, Siuzdak G. Baker ES, et al. Nat Methods. 2023 Dec;20(12):1836-1837. doi: 10.1038/s41592-023-02078-5. Nat Methods. 2023. PMID: 37932399 Free PMC article. No abstract available.
Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry.
Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES. Zheng X, et al. Among authors: baker es. J Phys Chem Lett. 2017 Apr 6;8(7):1381-1388. doi: 10.1021/acs.jpclett.6b03015. Epub 2017 Mar 15. J Phys Chem Lett. 2017. PMID: 28267339 Free PMC article.
A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets.
Zamith-Miranda D, Heyman HM, Burnet MC, Couvillion SP, Zheng X, Munoz N, Nelson WC, Kyle JE, Zink EM, Weitz KK, Bloodsworth KJ, Clair G, Zucker JD, Teuton JR, Payne SH, Kim YM, Reyes Gil M, Baker ES, Bredeweg EL, Nosanchuk JD, Nakayasu ES. Zamith-Miranda D, et al. Among authors: baker es. mBio. 2021 Dec 21;12(6):e0297221. doi: 10.1128/mBio.02972-21. Epub 2021 Nov 23. mBio. 2021. PMID: 34809453 Free PMC article.
Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity.
Kirkwood KI, Christopher MW, Burgess JL, Littau SR, Foster K, Richey K, Pratt BS, Shulman N, Tamura K, MacCoss MJ, MacLean BX, Baker ES. Kirkwood KI, et al. Among authors: baker es. J Proteome Res. 2022 Jan 7;21(1):232-242. doi: 10.1021/acs.jproteome.1c00820. Epub 2021 Dec 7. J Proteome Res. 2022. PMID: 34874736 Free PMC article.
Reverse metabolomics for the discovery of chemical structures from humans.
Gentry EC, Collins SL, Panitchpakdi M, Belda-Ferre P, Stewart AK, Carrillo Terrazas M, Lu HH, Zuffa S, Yan T, Avila-Pacheco J, Plichta DR, Aron AT, Wang M, Jarmusch AK, Hao F, Syrkin-Nikolau M, Vlamakis H, Ananthakrishnan AN, Boland BS, Hemperly A, Vande Casteele N, Gonzalez FJ, Clish CB, Xavier RJ, Chu H, Baker ES, Patterson AD, Knight R, Siegel D, Dorrestein PC. Gentry EC, et al. Among authors: baker es. Nature. 2024 Feb;626(7998):419-426. doi: 10.1038/s41586-023-06906-8. Epub 2023 Dec 5. Nature. 2024. PMID: 38052229 Free PMC article.
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut.
Foley MH, Walker ME, Stewart AK, O'Flaherty S, Gentry EC, Patel S, Beaty VV, Allen G, Pan M, Simpson JB, Perkins C, Vanhoy ME, Dougherty MK, McGill SK, Gulati AS, Dorrestein PC, Baker ES, Redinbo MR, Barrangou R, Theriot CM. Foley MH, et al. Among authors: baker es. Nat Microbiol. 2023 Apr;8(4):611-628. doi: 10.1038/s41564-023-01337-7. Epub 2023 Mar 13. Nat Microbiol. 2023. PMID: 36914755 Free PMC article.
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, Fasani RA, Tsalenko A, Tanjore D, Gardner J, Smith RD, Michener JK, Gladden JM, Baker ES, Petzold CJ, Kim YM, Apffel A, Magnuson JK, Burnum-Johnson KE. Bilbao A, et al. Among authors: baker es. Nat Commun. 2023 Apr 28;14(1):2461. doi: 10.1038/s41467-023-37031-9. Nat Commun. 2023. PMID: 37117207 Free PMC article.
178 results