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Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity.
Schwede M, Jahn K, Kuipers J, Miles LA, Bowman RL, Robinson T, Furudate K, Uryu H, Tanaka T, Sasaki Y, Ediriwickrema A, Benard B, Gentles AJ, Levine R, Beerenwinkel N, Takahashi K, Majeti R. Schwede M, et al. Among authors: beerenwinkel n. Res Sq [Preprint]. 2023 Nov 6:rs.3.rs-3516536. doi: 10.21203/rs.3.rs-3516536/v1. Res Sq. 2023. PMID: 37986825 Free PMC article. Updated. Preprint.
Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity.
Schwede M, Jahn K, Kuipers J, Miles LA, Bowman RL, Robinson T, Furudate K, Uryu H, Tanaka T, Sasaki Y, Ediriwickrema A, Benard B, Gentles AJ, Levine R, Beerenwinkel N, Takahashi K, Majeti R. Schwede M, et al. Among authors: beerenwinkel n. Leukemia. 2024 Mar 11. doi: 10.1038/s41375-024-02211-z. Online ahead of print. Leukemia. 2024. PMID: 38467769
Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.
Sutcliffe SG, Kraemer SA, Ellmen I, Knapp JJ, Overton AK, Nash D, Nissimov JI, Charles TC, Dreifuss D, Topolsky I, Baykal PI, Fuhrmann L, Jablonski KP, Beerenwinkel N, Levy JI, Olabode AS, Becker DG, Gugan G, Brintnell E, Poon AFY, Valieris R, Drummond RD, Defelicibus A, Dias-Neto E, Rosales RA, Tojal da Silva I, Orfanou A, Psomopoulos F, Pechlivanis N, Pipes L, Chen Z, Baaijens JA, Baym M, Shapiro BJ. Sutcliffe SG, et al. Among authors: beerenwinkel n. Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001249. Microb Genom. 2024. PMID: 38785221 Free article.
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.
Wegner F, Cabrera-Gil B, Tanguy A, Beckmann C, Beerenwinkel N, Bertelli C, Carrara M, Cerutti L, Chen C, Cordey S, Dumoulin A, du Plessis L, Friedli M, Gerth Y, Greub G, Härri A, Hirsch H, Howald C, Huber M, Imhof A, Kaiser L, Kufner V, Leib SL, Leuzinger K, Lleshi E, Martinetti G, Mäusezahl M, Moraz M, Neher R, Nolte O, Ramette A, Redondo M, Risch L, Rohner L, Roloff T, Schläepfer P, Schneider K, Singer F, Spina V, Stadler T, Studer E, Topolsky I, Trkola A, Walther D, Wohlwend N, Zehnder C, Neves A, Egli A; SPSP consortium. Wegner F, et al. Among authors: beerenwinkel n. Microbiol Spectr. 2024 May 2;12(5):e0362823. doi: 10.1128/spectrum.03628-23. Epub 2024 Mar 18. Microbiol Spectr. 2024. PMID: 38497714 Free PMC article.
Optimal timing of a colonoscopy screening schedule depends on adenoma detection, adenoma risk, adherence to screening and the screening objective: A microsimulation study.
Zaika V, Prakash MK, Cheng CY, Schlander M, Lang BM, Beerenwinkel N, Sonnenberg A, Krupka N, Misselwitz B, Poleszczuk J. Zaika V, et al. Among authors: beerenwinkel n. PLoS One. 2024 May 24;19(5):e0304374. doi: 10.1371/journal.pone.0304374. eCollection 2024. PLoS One. 2024. PMID: 38787836 Free PMC article.
De novo detection of somatic variants in long-read single-cell RNA sequencing data.
Dondi A, Borgsmüller N, Ferreira PF, Haas BJ, Jacob F, Heinzelmann-Schwarz V; Tumor Profiler Consortium; Beerenwinkel N. Dondi A, et al. Among authors: beerenwinkel n. bioRxiv [Preprint]. 2024 Mar 8:2024.03.06.583775. doi: 10.1101/2024.03.06.583775. bioRxiv. 2024. PMID: 38496441 Free PMC article. Preprint.
236 results