Kuipers J - Search Results

1

Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity.

Schwede M, Jahn K, Kuipers J, Miles LA, Bowman RL, Robinson T, Furudate K, Uryu H, Tanaka T, Sasaki Y, Ediriwickrema A, Benard B, Gentles AJ, Levine R, Beerenwinkel N, Takahashi K, Majeti R. Schwede M, et al. Among authors: kuipers j. Res Sq [Preprint]. 2023 Nov 6:rs.3.rs-3516536. doi: 10.21203/rs.3.rs-3516536/v1. Res Sq. 2023. PMID: 37986825 Free PMC article. Updated. Preprint.

2

Tree inference for single-cell data.

Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: kuipers j. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.

3

Large-scale inference of conjunctive Bayesian networks.

Montazeri H, Kuipers J, Kouyos R, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Beerenwinkel N; Swiss HIV Cohort Study. Montazeri H, et al. Among authors: kuipers j. Bioinformatics. 2016 Sep 1;32(17):i727-i735. doi: 10.1093/bioinformatics/btw459. Bioinformatics. 2016. PMID: 27587695

4

pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Progression Dynamics.

Cristea S, Kuipers J, Beerenwinkel N. Cristea S, et al. Among authors: kuipers j. J Comput Biol. 2017 Jun;24(6):603-615. doi: 10.1089/cmb.2016.0171. Epub 2016 Dec 12. J Comput Biol. 2017. PMID: 27936934

5

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.

Hofmann AL, Behr J, Singer J, Kuipers J, Beisel C, Schraml P, Moch H, Beerenwinkel N. Hofmann AL, et al. Among authors: kuipers j. BMC Bioinformatics. 2017 Jan 3;18(1):8. doi: 10.1186/s12859-016-1417-7. BMC Bioinformatics. 2017. PMID: 28049408 Free PMC article.

6

Advances in understanding tumour evolution through single-cell sequencing.

Kuipers J, Jahn K, Beerenwinkel N. Kuipers J, et al. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):127-138. doi: 10.1016/j.bbcan.2017.02.001. Epub 2017 Feb 11. Biochim Biophys Acta Rev Cancer. 2017. PMID: 28193548 Free PMC article. Review.

7

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors.

Kuipers J, Jahn K, Raphael BJ, Beerenwinkel N. Kuipers J, et al. Genome Res. 2017 Nov;27(11):1885-1894. doi: 10.1101/gr.220707.117. Epub 2017 Oct 13. Genome Res. 2017. PMID: 29030470 Free PMC article.

8

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects.

Srivatsa S, Kuipers J, Schmich F, Eicher S, Emmenlauer M, Dehio C, Beerenwinkel N. Srivatsa S, et al. Among authors: kuipers j. Bioinformatics. 2018 Jul 1;34(13):i519-i527. doi: 10.1093/bioinformatics/bty240. Bioinformatics. 2018. PMID: 29950000 Free PMC article.

9

Mutational interactions define novel cancer subgroups.

Kuipers J, Thurnherr T, Moffa G, Suter P, Behr J, Goosen R, Christofori G, Beerenwinkel N. Kuipers J, et al. Nat Commun. 2018 Oct 19;9(1):4353. doi: 10.1038/s41467-018-06867-x. Nat Commun. 2018. PMID: 30341300 Free PMC article.

10

Single-cell mutation identification via phylogenetic inference.

Singer J, Kuipers J, Jahn K, Beerenwinkel N. Singer J, et al. Among authors: kuipers j. Nat Commun. 2018 Dec 4;9(1):5144. doi: 10.1038/s41467-018-07627-7. Nat Commun. 2018. PMID: 30514897 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

348 results

Search Page