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"iNETgrate": integrating DNA methylation and gene expression data in a single gene network.
Sajedi S, Ebrahimi G, Roudi R, Mehta I, Samimi H, Kazempour S, Zainulabadeen A, Docking TR, Arora SP, Cigarroa F, Seshadri S, Karsan A, Zare H. Sajedi S, et al. Among authors: docking tr. Res Sq [Preprint]. 2023 Aug 18:rs.3.rs-3246325. doi: 10.21203/rs.3.rs-3246325/v1. Res Sq. 2023. PMID: 37645739 Free PMC article. Updated. Preprint.
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia.
Docking TR, Parker JDK, Jädersten M, Duns G, Chang L, Jiang J, Pilsworth JA, Swanson LA, Chan SK, Chiu R, Nip KM, Mar S, Mo A, Wang X, Martinez-Høyer S, Stubbins RJ, Mungall KL, Mungall AJ, Moore RA, Jones SJM, Birol İ, Marra MA, Hogge D, Karsan A. Docking TR, et al. Nat Commun. 2021 Apr 30;12(1):2474. doi: 10.1038/s41467-021-22625-y. Nat Commun. 2021. PMID: 33931648 Free PMC article.
Assessing Limit of Detection in Clinical Sequencing.
Starks ER, Swanson L, Docking TR, Bosdet I, Munro S, Moore RA, Karsan A. Starks ER, et al. Among authors: docking tr. J Mol Diagn. 2021 Apr;23(4):455-466. doi: 10.1016/j.jmoldx.2020.12.010. Epub 2021 Jan 22. J Mol Diagn. 2021. PMID: 33486075 Free article.
Loss of lenalidomide-induced megakaryocytic differentiation leads to therapy resistance in del(5q) myelodysplastic syndrome.
Martinez-Høyer S, Deng Y, Parker J, Jiang J, Mo A, Docking TR, Gharaee N, Li J, Umlandt P, Fuller M, Jädersten M, Kulasekararaj A, Malcovati L, List AF, Hellström-Lindberg E, Platzbecker U, Karsan A. Martinez-Høyer S, et al. Among authors: docking tr. Nat Cell Biol. 2020 May;22(5):526-533. doi: 10.1038/s41556-020-0497-9. Epub 2020 Apr 6. Nat Cell Biol. 2020. PMID: 32251398
Sample Tracking Using Unique Sequence Controls.
Moore RA, Zeng T, Docking TR, Bosdet I, Butterfield YS, Munro S, Li I, Swanson L, Starks ER, Tse K, Mungall AJ, Holt RA, Karsan A. Moore RA, et al. Among authors: docking tr. J Mol Diagn. 2020 Feb;22(2):141-146. doi: 10.1016/j.jmoldx.2019.10.011. Epub 2019 Dec 16. J Mol Diagn. 2020. PMID: 31837431 Free article.
Genomic testing in myeloid malignancy.
Docking TR, Karsan A. Docking TR, et al. Int J Lab Hematol. 2019 May;41 Suppl 1:117-125. doi: 10.1111/ijlh.13022. Int J Lab Hematol. 2019. PMID: 31069982 Review.
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