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De novo design of high-affinity binders of bioactive helical peptides.
Nature. 2024 Feb;626(7998):435-442. doi: 10.1038/s41586-023-06953-1. Epub 2023 Dec 18.
Nature. 2024.
PMID: 38109936
Free PMC article.
Specificity landscapes unmask submaximal binding site preferences of transcription factors.
Bhimsaria D, Rodríguez-Martínez JA, Pan J, Roston D, Korkmaz EN, Cui Q, Ramanathan P, Ansari AZ.
Bhimsaria D, et al. Among authors: korkmaz en.
Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):E10586-E10595. doi: 10.1073/pnas.1811431115. Epub 2018 Oct 19.
Proc Natl Acad Sci U S A. 2018.
PMID: 30341220
Free PMC article.
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A composite approach towards a complete model of the myosin rod.
Korkmaz EN, Taylor KC, Andreas MP, Ajay G, Heinze NT, Cui Q, Rayment I.
Korkmaz EN, et al.
Proteins. 2016 Jan;84(1):172-189. doi: 10.1002/prot.24964. Epub 2015 Dec 9.
Proteins. 2016.
PMID: 26573747
Free PMC article.
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Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities.
Pham GH, Rana AS, Korkmaz EN, Trang VH, Cui Q, Strieter ER.
Pham GH, et al. Among authors: korkmaz en.
Protein Sci. 2016 Feb;25(2):456-71. doi: 10.1002/pro.2834. Epub 2016 Jan 12.
Protein Sci. 2016.
PMID: 26506216
Free PMC article.
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Skip residues modulate the structural properties of the myosin rod and guide thick filament assembly.
Taylor KC, Buvoli M, Korkmaz EN, Buvoli A, Zheng Y, Heinze NT, Cui Q, Leinwand LA, Rayment I.
Taylor KC, et al. Among authors: korkmaz en.
Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3806-15. doi: 10.1073/pnas.1505813112. Epub 2015 Jul 6.
Proc Natl Acad Sci U S A. 2015.
PMID: 26150528
Free PMC article.
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Interplay of Electrostatics and Hydrophobic Effects in the Metamorphic Protein Human Lymphotactin.
Korkmaz EN, Volkman BF, Cui Q.
Korkmaz EN, et al.
J Phys Chem B. 2015 Jul 30;119(30):9547-58. doi: 10.1021/acs.jpcb.5b02810. Epub 2015 Jul 16.
J Phys Chem B. 2015.
PMID: 26134347
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Identification of the Ah-receptor structural determinants for ligand preferences.
Xing Y, Nukaya M, Satyshur KA, Jiang L, Stanevich V, Korkmaz EN, Burdette L, Kennedy GD, Cui Q, Bradfield CA.
Xing Y, et al. Among authors: korkmaz en.
Toxicol Sci. 2012 Sep;129(1):86-97. doi: 10.1093/toxsci/kfs194. Epub 2012 Jun 2.
Toxicol Sci. 2012.
PMID: 22659362
Free PMC article.
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Conformational control of the binding of the transactivation domain of the MLL protein and c-Myb to the KIX domain of CREB.
Korkmaz EN, Nussinov R, Haliloğlu T.
Korkmaz EN, et al.
PLoS Comput Biol. 2012;8(3):e1002420. doi: 10.1371/journal.pcbi.1002420. Epub 2012 Mar 15.
PLoS Comput Biol. 2012.
PMID: 22438798
Free PMC article.
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