Stanley N - Search Results

1

Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets.

Yi H, Plotkin A, Stanley N. Yi H, et al. Among authors: stanley n. Genome Biol. 2024 Jan 3;25(1):9. doi: 10.1186/s13059-023-03143-0. Genome Biol. 2024. PMID: 38172966 Free PMC article.

2

A Graph Coarsening Algorithm for Compressing Representations of Single-Cell Data with Clinical or Experimental Attributes.

Chen CJ, Crawford E, Stanley N. Chen CJ, et al. Among authors: stanley n. Pac Symp Biocomput. 2023;28:85-96. Pac Symp Biocomput. 2023. PMID: 36540967 Free article.

3

Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets.

Yi H, Plotkin A, Stanley N. Yi H, et al. Among authors: stanley n. bioRxiv [Preprint]. 2023 Feb 27:2023.02.24.529894. doi: 10.1101/2023.02.24.529894. bioRxiv. 2023. PMID: 36909641 Free PMC article. Updated. Preprint.

4

scLKME: A Landmark-based Approach for Generating Multi-cellular Sample Embeddings from Single-cell Data.

Yi H, Stanley N. Yi H, et al. Among authors: stanley n. bioRxiv [Preprint]. 2023 Nov 15:2023.11.13.566846. doi: 10.1101/2023.11.13.566846. bioRxiv. 2023. PMID: 38014189 Free PMC article. Preprint.

5

Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks.

Shahir JA, Stanley N, Purvis JE. Shahir JA, et al. Among authors: stanley n. BMC Bioinformatics. 2024 Jan 15;25(1):25. doi: 10.1186/s12859-024-05641-9. BMC Bioinformatics. 2024. PMID: 38221640 Free PMC article.

6

DELVE: feature selection for preserving biological trajectories in single-cell data.

Ranek JS, Stallaert W, Milner JJ, Redick M, Wolff SC, Beltran AS, Stanley N, Purvis JE. Ranek JS, et al. Among authors: stanley n. Nat Commun. 2024 Mar 29;15(1):2765. doi: 10.1038/s41467-024-46773-z. Nat Commun. 2024. PMID: 38553455 Free PMC article.

7

Feature selection for preserving biological trajectories in single-cell data.

Ranek JS, Stallaert W, Milner J, Stanley N, Purvis JE. Ranek JS, et al. Among authors: stanley n. bioRxiv [Preprint]. 2023 May 12:2023.05.09.540043. doi: 10.1101/2023.05.09.540043. bioRxiv. 2023. PMID: 37214963 Free PMC article. Updated. Preprint.

8

Dominant CD4⁺ T cell receptors remain stable throughout antiretroviral therapy-mediated immune restoration in people with HIV.

Sponaugle A, Weideman AMK, Ranek J, Atassi G, Kuruc J, Adimora AA, Archin NM, Gay C, Kuritzkes DR, Margolis DM, Vincent BG, Stanley N, Hudgens MG, Eron JJ, Goonetilleke N. Sponaugle A, et al. Among authors: stanley n. Cell Rep Med. 2023 Nov 21;4(11):101268. doi: 10.1016/j.xcrm.2023.101268. Epub 2023 Nov 9. Cell Rep Med. 2023. PMID: 37949070 Free PMC article.

9

Endoscopic mucosal phenotypes and endoscopic Sydney system gastritis assessment in relation to Helicobacter pylori infection and upper digestive clinical signs: A 2-year study among patients with gastroduodenal disorders in Cameroon.

Tali Nguefak LD, Faujo Nintewoue GF, Stanley NN, Talla P, Ngatcha G, Tagni SM, Jude-Marcel NNM, Paul DJ, Kouitcheu Mabeku LB. Tali Nguefak LD, et al. Among authors: stanley nn. JGH Open. 2024 May 8;8(5):e13060. doi: 10.1002/jgh3.13060. eCollection 2024 May. JGH Open. 2024. PMID: 38725943 Free PMC article.

10

Association of antibiotic duration and all-cause mortality in a prospective study of patients with ventilator-associated pneumonia in a tertiary-level critical care unit in Southern India.

Stanley ND, Jeevan JA, Yadav B, Gunasekaran K, Pichamuthu K, Chandiraseharan VK, Sathyendra S, Hansdak SG, Iyyadurai R. Stanley ND, et al. BMJ Open. 2024 Apr 11;14(4):e077428. doi: 10.1136/bmjopen-2023-077428. BMJ Open. 2024. PMID: 38604633 Free PMC article.

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