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Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships.
Kudron M, Gevirtzman L, Victorsen A, Lear BC, Gao J, Xu J, Samanta S, Frink E, Tran-Pearson A, Huynh C, Vafeados D, Hammonds A, Fisher W, Wall M, Wesseling G, Hernandez V, Lin Z, Kasparian M, White K, Allada R, Gerstein M, Hillier L, Celniker SE, Reinke V, Waterston RH. Kudron M, et al. Among authors: reinke v. bioRxiv [Preprint]. 2024 Jan 20:2024.01.18.576242. doi: 10.1101/2024.01.18.576242. bioRxiv. 2024. PMID: 38293065 Free PMC article. Preprint.
The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.
Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. Kudron MM, et al. Among authors: reinke v. Genetics. 2018 Mar;208(3):937-949. doi: 10.1534/genetics.117.300657. Epub 2017 Dec 28. Genetics. 2018. PMID: 29284660 Free PMC article.
Regulatory analysis of the C. elegans genome with spatiotemporal resolution.
Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, Reinke V, Waterston RH, Snyder M. Araya CL, et al. Among authors: reinke v. Nature. 2014 Aug 28;512(7515):400-5. doi: 10.1038/nature13497. Nature. 2014. PMID: 25164749 Free PMC article.
The time-resolved transcriptome of C. elegans.
Boeck ME, Huynh C, Gevirtzman L, Thompson OA, Wang G, Kasper DM, Reinke V, Hillier LW, Waterston RH. Boeck ME, et al. Among authors: reinke v. Genome Res. 2016 Oct;26(10):1441-1450. doi: 10.1101/gr.202663.115. Epub 2016 Aug 16. Genome Res. 2016. PMID: 27531719 Free PMC article.
Comparative analysis of regulatory information and circuits across distant species.
Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, Ma L, Niu W, Rehm EJ, Rozowsky J, Slattery M, Spokony R, Terrell R, Vafeados D, Wang D, Weisdepp P, Wu YC, Xie D, Yan KK, Feingold EA, Good PJ, Pazin MJ, Huang H, Bickel PJ, Brenner SE, Reinke V, Waterston RH, Gerstein M, White KP, Kellis M, Snyder M. Boyle AP, et al. Among authors: reinke v. Nature. 2014 Aug 28;512(7515):453-6. doi: 10.1038/nature13668. Nature. 2014. PMID: 25164757 Free PMC article.
Developmental genomic approaches in model organisms.
Reinke V, White KP. Reinke V, et al. Annu Rev Genomics Hum Genet. 2002;3:153-78. doi: 10.1146/annurev.genom.3.031302.100922. Epub 2002 Apr 15. Annu Rev Genomics Hum Genet. 2002. PMID: 12142361 Review.
85 results