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CDCP: a visualization and analyzing platform for single-cell datasets.
Li Y, Yang T, Lai T, You L, Yang F, Qiu J, Wang L, Du W, Hua C, Xu Z, Cai J, Li Z, Liu Y, Li L, Zhang M, Chen J, Zhang L, Chen D, Wang W, Liu S, Wu L, Zeng W, Wang B, Wei X, Liu L, Chen F. Li Y, et al. Among authors: yang t, yang f. J Genet Genomics. 2022 Jul;49(7):689-692. doi: 10.1016/j.jgg.2021.12.004. Epub 2021 Dec 29. J Genet Genomics. 2022. PMID: 34973426 No abstract available.
Cell transcriptomic atlas of the non-human primate Macaca fascicularis.
Han L, Wei X, Liu C, Volpe G, Zhuang Z, Zou X, Wang Z, Pan T, Yuan Y, Zhang X, Fan P, Guo P, Lai Y, Lei Y, Liu X, Yu F, Shangguan S, Lai G, Deng Q, Liu Y, Wu L, Shi Q, Yu H, Huang Y, Cheng M, Xu J, Liu Y, Wang M, Wang C, Zhang Y, Xie D, Yang Y, Yu Y, Zheng H, Wei Y, Huang F, Lei J, Huang W, Zhu Z, Lu H, Wang B, Wei X, Chen F, Yang T, Du W, Chen J, Xu S, An J, Ward C, Wang Z, Pei Z, Wong CW, Liu X, Zhang H, Liu M, Qin B, Schambach A, Isern J, Feng L, Liu Y, Guo X, Liu Z, Sun Q, Maxwell PH, Barker N, Muñoz-Cánoves P, Gu Y, Mulder J, Uhlen M, Tan T, Liu S, Yang H, Wang J, Hou Y, Xu X, Esteban MA, Liu L. Han L, et al. Among authors: yang t, yang h, yang y. Nature. 2022 Apr;604(7907):723-731. doi: 10.1038/s41586-022-04587-3. Epub 2022 Apr 13. Nature. 2022. PMID: 35418686
High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae.
Wang M, Hu Q, Lv T, Wang Y, Lan Q, Xiang R, Tu Z, Wei Y, Han K, Shi C, Guo J, Liu C, Yang T, Du W, An Y, Cheng M, Xu J, Lu H, Li W, Zhang S, Chen A, Chen W, Li Y, Wang X, Xu X, Hu Y, Liu L. Wang M, et al. Among authors: yang t. Dev Cell. 2022 May 23;57(10):1271-1283.e4. doi: 10.1016/j.devcel.2022.04.006. Epub 2022 May 4. Dev Cell. 2022. PMID: 35512700 Free article.
Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis.
Liu C, Li R, Li Y, Lin X, Zhao K, Liu Q, Wang S, Yang X, Shi X, Ma Y, Pei C, Wang H, Bao W, Hui J, Yang T, Xu Z, Lai T, Berberoglu MA, Sahu SK, Esteban MA, Ma K, Fan G, Li Y, Liu S, Chen A, Xu X, Dong Z, Liu L. Liu C, et al. Among authors: yang t, yang x. Dev Cell. 2022 May 23;57(10):1284-1298.e5. doi: 10.1016/j.devcel.2022.04.009. Epub 2022 May 4. Dev Cell. 2022. PMID: 35512701 Free article.
Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines.
Zhu Q, Zhao X, Zhang Y, Li Y, Liu S, Han J, Sun Z, Wang C, Deng D, Wang S, Tang Y, Huang Y, Jiang S, Tian C, Chen X, Yuan Y, Li Z, Yang T, Lai T, Liu Y, Yang W, Zou X, Zhang M, Cui H, Liu C, Jin X, Hu Y, Chen A, Xu X, Li G, Hou Y, Liu L, Liu S, Fang L, Chen W, Wu L. Zhu Q, et al. Among authors: yang t, yang w. Nat Commun. 2023 Dec 9;14(1):8170. doi: 10.1038/s41467-023-43991-9. Nat Commun. 2023. PMID: 38071219 Free PMC article.
A spatiotemporal atlas of cholestatic injury and repair in mice.
Wu B, Shentu X, Nan H, Guo P, Hao S, Xu J, Shangguan S, Cui L, Cen J, Deng Q, Wu Y, Liu C, Song Y, Lin X, Wang Z, Yuan Y, Ma W, Li R, Li Y, Qian Q, Du W, Lai T, Yang T, Liu C, Ma X, Chen A, Xu X, Lai Y, Liu L, Esteban MA, Hui L. Wu B, et al. Among authors: yang t. Nat Genet. 2024 May;56(5):938-952. doi: 10.1038/s41588-024-01687-w. Epub 2024 Apr 16. Nat Genet. 2024. PMID: 38627596
A spatiotemporal atlas of mouse liver homeostasis and regeneration.
Xu J, Guo P, Hao S, Shangguan S, Shi Q, Volpe G, Huang K, Zuo J, An J, Yuan Y, Cheng M, Deng Q, Zhang X, Lai G, Nan H, Wu B, Shentu X, Wu L, Wei X, Jiang Y, Huang X, Pan F, Song Y, Li R, Wang Z, Liu C, Liu S, Li Y, Yang T, Xu Z, Du W, Li L, Ahmed T, You K, Dai Z, Li L, Qin B, Li Y, Lai L, Qin D, Chen J, Fan R, Li Y, Hou J, Ott M, Sharma AD, Cantz T, Schambach A, Kristiansen K, Hutchins AP, Göttgens B, Maxwell PH, Hui L, Xu X, Liu L, Chen A, Lai Y, Esteban MA. Xu J, et al. Among authors: yang t. Nat Genet. 2024 May;56(5):953-969. doi: 10.1038/s41588-024-01709-7. Epub 2024 Apr 16. Nat Genet. 2024. PMID: 38627598
A spatial transcriptome map of the developing maize ear.
Wang Y, Luo Y, Guo X, Li Y, Yan J, Shao W, Wei W, Wei X, Yang T, Chen J, Chen L, Ding Q, Bai M, Zhuo L, Li L, Jackson D, Zhang Z, Xu X, Yan J, Liu H, Liu L, Yang N. Wang Y, et al. Among authors: yang t, yang n. Nat Plants. 2024 May;10(5):815-827. doi: 10.1038/s41477-024-01683-2. Epub 2024 May 14. Nat Plants. 2024. PMID: 38745100
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration.
Wei X, Fu S, Li H, Liu Y, Wang S, Feng W, Yang Y, Liu X, Zeng YY, Cheng M, Lai Y, Qiu X, Wu L, Zhang N, Jiang Y, Xu J, Su X, Peng C, Han L, Lou WP, Liu C, Yuan Y, Ma K, Yang T, Pan X, Gao S, Chen A, Esteban MA, Yang H, Wang J, Fan G, Liu L, Chen L, Xu X, Fei JF, Gu Y. Wei X, et al. Among authors: yang t, yang h, yang y. Science. 2022 Sep 2;377(6610):eabp9444. doi: 10.1126/science.abp9444. Epub 2022 Sep 2. Science. 2022. PMID: 36048929
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