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Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.
Res Sq [Preprint]. 2024 Jan 25:rs.3.rs-3864137. doi: 10.21203/rs.3.rs-3864137/v1.
Res Sq. 2024.
PMID: 38343795
Free PMC article.
Preprint.
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA Jr, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W.
Lawson CL, et al. Among authors: hoh sw.
Nat Methods. 2021 Feb;18(2):156-164. doi: 10.1038/s41592-020-01051-w. Epub 2021 Feb 4.
Nat Methods. 2021.
PMID: 33542514
Free PMC article.
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Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
Hoh SW, Burnley T, Cowtan K.
Hoh SW, et al.
Acta Crystallogr D Struct Biol. 2020 Jun 1;76(Pt 6):531-541. doi: 10.1107/S2059798320005513. Epub 2020 May 29.
Acta Crystallogr D Struct Biol. 2020.
PMID: 32496215
Free PMC article.
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Automating tasks in protein structure determination with the clipper python module.
McNicholas S, Croll T, Burnley T, Palmer CM, Hoh SW, Jenkins HT, Dodson E, Cowtan K, Agirre J.
McNicholas S, et al. Among authors: hoh sw.
Protein Sci. 2018 Jan;27(1):207-216. doi: 10.1002/pro.3299. Epub 2017 Nov 6.
Protein Sci. 2018.
PMID: 28901669
Free PMC article.
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The CCP4 suite: integrative software for macromolecular crystallography.
Agirre J, Atanasova M, Bagdonas H, Ballard CB, Baslé A, Beilsten-Edmands J, Borges RJ, Brown DG, Burgos-Mármol JJ, Berrisford JM, Bond PS, Caballero I, Catapano L, Chojnowski G, Cook AG, Cowtan KD, Croll TI, Debreczeni JÉ, Devenish NE, Dodson EJ, Drevon TR, Emsley P, Evans G, Evans PR, Fando M, Foadi J, Fuentes-Montero L, Garman EF, Gerstel M, Gildea RJ, Hatti K, Hekkelman ML, Heuser P, Hoh SW, Hough MA, Jenkins HT, Jiménez E, Joosten RP, Keegan RM, Keep N, Krissinel EB, Kolenko P, Kovalevskiy O, Lamzin VS, Lawson DM, Lebedev AA, Leslie AGW, Lohkamp B, Long F, Malý M, McCoy AJ, McNicholas SJ, Medina A, Millán C, Murray JW, Murshudov GN, Nicholls RA, Noble MEM, Oeffner R, Pannu NS, Parkhurst JM, Pearce N, Pereira J, Perrakis A, Powell HR, Read RJ, Rigden DJ, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick GM, Shelley KL, Simkovic F, Simpkin AJ, Skubak P, Sobolev E, Steiner RA, Stevenson K, Tews I, Thomas JMH, Thorn A, Valls JT, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson KS, Winn MD, Winter G, Wojdyr M, Yamashita K.
Agirre J, et al. Among authors: hoh sw.
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30.
Acta Crystallogr D Struct Biol. 2023.
PMID: 37259835
Free PMC article.
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