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Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria.
Vargas-Gastélum L, Romer AS, Ghotbi M, Dallas JW, Alexander NR, Moe KC, McPhail KL, Neuhaus GF, Shadmani L, Spatafora JW, Stajich JE, Tabima JF, Walker DM. Vargas-Gastélum L, et al. Among authors: stajich je. mSphere. 2024 Mar 26;9(3):e0047523. doi: 10.1128/msphere.00475-23. Epub 2024 Feb 13. mSphere. 2024. PMID: 38349154 Free PMC article.
The fungi.
Stajich JE, Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. Stajich JE, et al. Curr Biol. 2009 Sep 29;19(18):R840-5. doi: 10.1016/j.cub.2009.07.004. Curr Biol. 2009. PMID: 19788875 Free PMC article. No abstract available.
Toward genome-enabled mycology.
Hibbett DS, Stajich JE, Spatafora JW. Hibbett DS, et al. Among authors: stajich je. Mycologia. 2013 Nov-Dec;105(6):1339-49. doi: 10.3852/13-196. Epub 2013 Aug 8. Mycologia. 2013. PMID: 23928422
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. Spatafora JW, et al. Among authors: stajich je. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. Mycologia. 2016. PMID: 27738200 Free PMC article.
Widespread adenine N6-methylation of active genes in fungi.
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Mondo SJ, et al. Among authors: stajich je. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481340
Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota.
Chang Y, Desirò A, Na H, Sandor L, Lipzen A, Clum A, Barry K, Grigoriev IV, Martin FM, Stajich JE, Smith ME, Bonito G, Spatafora JW. Chang Y, et al. Among authors: stajich je. New Phytol. 2019 Apr;222(1):511-525. doi: 10.1111/nph.15613. Epub 2019 Jan 12. New Phytol. 2019. PMID: 30485448 Free article.
Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).
Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY. Davis WJ, et al. Among authors: stajich je. Mol Phylogenet Evol. 2019 Apr;133:152-163. doi: 10.1016/j.ympev.2019.01.006. Epub 2019 Jan 11. Mol Phylogenet Evol. 2019. PMID: 30639767 Free PMC article.
Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange.
Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Uehling JK, et al. Among authors: stajich je. Front Microbiol. 2019 Oct 1;10:2163. doi: 10.3389/fmicb.2019.02163. eCollection 2019. Front Microbiol. 2019. PMID: 31632357 Free PMC article.
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus.
Tabima JF, Trautman IA, Chang Y, Wang Y, Mondo S, Kuo A, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW. Tabima JF, et al. Among authors: stajich je. G3 (Bethesda). 2020 Sep 2;10(9):3417-3433. doi: 10.1534/g3.120.401516. G3 (Bethesda). 2020. PMID: 32727924 Free PMC article.
245 results