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Page 1
Pan-cancer proteogenomics characterization of tumor immunity.
Petralia F, Ma W, Yaron TM, Caruso FP, Tignor N, Wang JM, Charytonowicz D, Johnson JL, Huntsman EM, Marino GB, Calinawan A, Evangelista JE, Selvan ME, Chowdhury S, Rykunov D, Krek A, Song X, Turhan B, Christianson KE, Lewis DA, Deng EZ, Clarke DJB, Whiteaker JR, Kennedy JJ, Zhao L, Segura RL, Batra H, Raso MG, Parra ER, Soundararajan R, Tang X, Li Y, Yi X, Satpathy S, Wang Y, Wiznerowicz M, González-Robles TJ, Iavarone A, Gosline SJC, Reva B, Robles AI, Nesvizhskii AI, Mani DR, Gillette MA, Klein RJ, Cieslik M, Zhang B, Paulovich AG, Sebra R, Gümüş ZH, Hostetter G, Fenyö D, Omenn GS, Cantley LC, Ma'ayan A, Lazar AJ, Ceccarelli M, Wang P; Clinical Proteomic Tumor Analysis Consortium. Petralia F, et al. Among authors: evangelista je. Cell. 2024 Feb 29;187(5):1255-1277.e27. doi: 10.1016/j.cell.2024.01.027. Epub 2024 Feb 14. Cell. 2024. PMID: 38359819 Free PMC article.
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Stathias V, Turner J, Koleti A, Vidovic D, Cooper D, Fazel-Najafabadi M, Pilarczyk M, Terryn R, Chung C, Umeano A, Clarke DJB, Lachmann A, Evangelista JE, Ma'ayan A, Medvedovic M, Schürer SC. Stathias V, et al. Among authors: evangelista je. Nucleic Acids Res. 2020 Jan 8;48(D1):D431-D439. doi: 10.1093/nar/gkz1023. Nucleic Acids Res. 2020. PMID: 31701147 Free PMC article.
The COVID-19 Gene and Drug Set Library.
Kuleshov MV, Clarke DJB, Kropiwnicki E, Jagodnik KM, Bartal A, Evangelista JE, Zhou A, Ferguson LB, Lachmann A, Ma'ayan A. Kuleshov MV, et al. Among authors: evangelista je. Res Sq [Preprint]. 2020 May 13:rs.3.rs-28582. doi: 10.21203/rs.3.rs-28582/v1. Res Sq. 2020. PMID: 32702729 Free PMC article. Updated. Preprint.
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing.
Clarke DJB, Rebman AW, Bailey A, Wojciechowicz ML, Jenkins SL, Evangelista JE, Danieletto M, Fan J, Eshoo MW, Mosel MR, Robinson W, Ramadoss N, Bobe J, Soloski MJ, Aucott JN, Ma'ayan A. Clarke DJB, et al. Among authors: evangelista je. Front Immunol. 2021 Mar 8;12:636289. doi: 10.3389/fimmu.2021.636289. eCollection 2021. Front Immunol. 2021. PMID: 33763080 Free PMC article.
Gene Set Knowledge Discovery with Enrichr.
Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, Lachmann A, Wojciechowicz ML, Kropiwnicki E, Jagodnik KM, Jeon M, Ma'ayan A. Xie Z, et al. Among authors: evangelista je. Curr Protoc. 2021 Mar;1(3):e90. doi: 10.1002/cpz1.90. Curr Protoc. 2021. PMID: 33780170 Free PMC article.
Gene and drug landing page aggregator.
Clarke DJB, Kuleshov MV, Xie Z, Evangelista JE, Meyers MR, Kropiwnicki E, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Among authors: evangelista je. Bioinform Adv. 2022 Feb 28;2(1):vbac013. doi: 10.1093/bioadv/vbac013. eCollection 2022. Bioinform Adv. 2022. PMID: 35368424 Free PMC article.
Getting Started with LINCS Datasets and Tools.
Xie Z, Kropiwnicki E, Wojciechowicz ML, Jagodnik KM, Shu I, Bailey A, Clarke DJB, Jeon M, Evangelista JE, V Kuleshov M, Lachmann A, Parigi AA, Sanchez JM, Jenkins SL, Ma'ayan A. Xie Z, et al. Among authors: evangelista je. Curr Protoc. 2022 Jul;2(7):e487. doi: 10.1002/cpz1.487. Curr Protoc. 2022. PMID: 35876555 Free PMC article.
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