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A combination of conserved and diverged responses underlies Theobroma cacao's defense response to Phytophthora palmivora.
BMC Biol. 2024 Feb 16;22(1):38. doi: 10.1186/s12915-024-01831-2.
BMC Biol. 2024.
PMID: 38360697
Free PMC article.
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.
Timilsena PR, Barrett CF, Piñeyro-Nelson A, Wafula EK, Ayyampalayam S, McNeal JR, Yukawa T, Givnish TJ, Graham SW, Pires JC, Davis JI, Ané C, Stevenson DW, Leebens-Mack J, Martínez-Salas E, Álvarez-Buylla ER, dePamphilis CW.
Timilsena PR, et al.
Genome Biol Evol. 2023 Jan 4;15(1):evac183. doi: 10.1093/gbe/evac183.
Genome Biol Evol. 2023.
PMID: 36582124
Free PMC article.
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Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
Timilsena PR, Wafula EK, Barrett CF, Ayyampalayam S, McNeal JR, Rentsch JD, McKain MR, Heyduk K, Harkess A, Villegente M, Conran JG, Illing N, Fogliani B, Ané C, Pires JC, Davis JI, Zomlefer WB, Stevenson DW, Graham SW, Givnish TJ, Leebens-Mack J, dePamphilis CW.
Timilsena PR, et al.
Front Plant Sci. 2022 Nov 22;13:876779. doi: 10.3389/fpls.2022.876779. eCollection 2022.
Front Plant Sci. 2022.
PMID: 36483967
Free PMC article.
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Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes.
Zhang H, Wafula EK, Eilers J, Harkess AE, Ralph PE, Timilsena PR, dePamphilis CW, Waite JM, Honaas LA.
Zhang H, et al. Among authors: timilsena pr.
Front Plant Sci. 2022 Nov 14;13:975942. doi: 10.3389/fpls.2022.975942. eCollection 2022.
Front Plant Sci. 2022.
PMID: 36452099
Free PMC article.
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Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants.
Yang Z, Wafula EK, Kim G, Shahid S, McNeal JR, Ralph PE, Timilsena PR, Yu WB, Kelly EA, Zhang H, Person TN, Altman NS, Axtell MJ, Westwood JH, dePamphilis CW.
Yang Z, et al. Among authors: timilsena pr.
Nat Plants. 2019 Sep;5(9):991-1001. doi: 10.1038/s41477-019-0458-0. Epub 2019 Jul 22.
Nat Plants. 2019.
PMID: 31332314
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Fern genomes elucidate land plant evolution and cyanobacterial symbioses.
Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.
Li FW, et al. Among authors: timilsena pr.
Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.
Nat Plants. 2018.
PMID: 29967517
Free PMC article.
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