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PathwayNexus: a tool for interactive metabolic data analysis.
Bioinformatics. 2024 May 9:btae310. doi: 10.1093/bioinformatics/btae310. Online ahead of print.
Bioinformatics. 2024.
PMID: 38724240
De-Emphasise, Aggregate, and Hide: A Study of Interactive Visual Transformations for Group Structures in Network Visualisations.
Aichem M, Klein K, Kobourov S, Schreiber F.
Aichem M, et al.
IEEE Trans Vis Comput Graph. 2024 May 9;PP. doi: 10.1109/TVCG.2024.3397785. Online ahead of print.
IEEE Trans Vis Comput Graph. 2024.
PMID: 38722718
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Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Peña-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernández MF, Bermudez V, Tsirvouli E, Montagud A, Noël V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Piñero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, De Meulder B, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D'Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R; COVID-19 Disease Map Community.
Niarakis A, et al. Among authors: aichem m.
Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389/fimmu.2023.1282859. eCollection 2023.
Front Immunol. 2024.
PMID: 38414974
Free PMC article.
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Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality.
Aichem M, Klein K, Czauderna T, Garkov D, Zhao J, Li J, Schreiber F.
Aichem M, et al.
J Integr Bioinform. 2022 Oct 11;19(4):20220034. doi: 10.1515/jib-2022-0034. eCollection 2022 Dec 1.
J Integr Bioinform. 2022.
PMID: 36215728
Free PMC article.
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Visual exploration of large metabolic models.
Aichem M, Czauderna T, Zhu Y, Zhao J, Klapperstück M, Klein K, Li J, Schreiber F.
Aichem M, et al.
Bioinformatics. 2021 Dec 7;37(23):4460-4468. doi: 10.1093/bioinformatics/btab335.
Bioinformatics. 2021.
PMID: 33970212
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Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection Model.
Zhao J, Zhu Y, Han J, Lin YW, Aichem M, Wang J, Chen K, Velkov T, Schreiber F, Li J.
Zhao J, et al. Among authors: aichem m.
Microorganisms. 2020 Nov 16;8(11):1793. doi: 10.3390/microorganisms8111793.
Microorganisms. 2020.
PMID: 33207684
Free PMC article.
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Corrigendum to A high-throughput approach to identify specific neurotoxicants / developmental toxicants in human neuronal cell function assays.
Delp J, Gutbier S, Klima S, Hoelting L, Pinto-Gil K, Hsieh JH, Aichem M, Klein K, Schreiber F, Tice RR, Pastor M, Behl M, Leist M.
Delp J, et al. Among authors: aichem m.
ALTEX. 2019;36(3):505. doi: 10.14573/altex.1904111.
ALTEX. 2019.
PMID: 31329253
Free article.
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A high-throughput approach to identify specific neurotoxicants/ developmental toxicants in human neuronal cell function assays.
Delp J, Gutbier S, Klima S, Hoelting L, Pinto-Gil K, Hsieh JH, Aichem M, Klein K, Schreiber F, Tice RR, Pastor M, Behl M, Leist M.
Delp J, et al. Among authors: aichem m.
ALTEX. 2018;35(2):235-253. doi: 10.14573/altex.1712182. Epub 2018 Jan 21.
ALTEX. 2018.
PMID: 29423527
Free PMC article.
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