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Identification of robust cellular programs using reproducible LDA that impact sex-specific disease progression in different genotypes of a mouse model of AD.
bioRxiv [Preprint]. 2024 Feb 29:2024.02.26.582178. doi: 10.1101/2024.02.26.582178.
bioRxiv. 2024.
PMID: 38464087
Free PMC article.
Preprint.
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A, Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O, Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A.
Reese F, et al. Among authors: rebboah e.
bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865.
bioRxiv. 2023.
PMID: 37292896
Free PMC article.
Preprint.
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Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq.
Rebboah E, Reese F, Williams K, Balderrama-Gutierrez G, McGill C, Trout D, Rodriguez I, Liang H, Wold BJ, Mortazavi A.
Rebboah E, et al.
Genome Biol. 2021 Oct 7;22(1):286. doi: 10.1186/s13059-021-02505-w.
Genome Biol. 2021.
PMID: 34620214
Free PMC article.
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Experience-dependent remodeling of basket cell networks in the dentate gyrus.
Pieraut S, Gounko N, Sando R 3rd, Dang W, Rebboah E, Panda S, Madisen L, Zeng H, Maximov A.
Pieraut S, et al. Among authors: rebboah e.
Neuron. 2014 Oct 1;84(1):107-122. doi: 10.1016/j.neuron.2014.09.012.
Neuron. 2014.
PMID: 25277456
Free PMC article.
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