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Identification of robust cellular programs using reproducible LDA that impact sex-specific disease progression in different genotypes of a mouse model of AD.
Rezaie N, Rebboah E, Williams BA, Liang HY, Reese F, Balderrama-Gutierrez G, Dionne LA, Reinholdt L, Trout D, Wold BJ, Mortazavi A. Rezaie N, et al. Among authors: wold bj. bioRxiv [Preprint]. 2024 Feb 29:2024.02.26.582178. doi: 10.1101/2024.02.26.582178. bioRxiv. 2024. PMID: 38464087 Free PMC article. Preprint.
RNA editing in the human ENCODE RNA-seq data.
Park E, Williams B, Wold BJ, Mortazavi A. Park E, et al. Among authors: wold bj. Genome Res. 2012 Sep;22(9):1626-33. doi: 10.1101/gr.134957.111. Genome Res. 2012. PMID: 22955975 Free PMC article.
Mining gene expression data by interpreting principal components.
Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE. Roden JC, et al. Among authors: wold bj. BMC Bioinformatics. 2006 Apr 7;7:194. doi: 10.1186/1471-2105-7-194. BMC Bioinformatics. 2006. PMID: 16600052 Free PMC article.
Dynamics of microRNA expression during mouse prenatal development.
Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, Scavelli A, Gingeras TR, Wold BJ, Myers RM, Guigó R, Mortazavi A. Rahmanian S, et al. Among authors: wold bj. Genome Res. 2019 Nov;29(11):1900-1909. doi: 10.1101/gr.248997.119. Epub 2019 Oct 23. Genome Res. 2019. PMID: 31645363 Free PMC article.
A ratiometric-based measure of gene co-expression.
Abelin AC, Marinov GK, Williams BA, McCue K, Wold BJ. Abelin AC, et al. Among authors: wold bj. BMC Bioinformatics. 2014 Nov 20;15(1):331. doi: 10.1186/1471-2105-15-331. BMC Bioinformatics. 2014. PMID: 25411051 Free PMC article.
80 results