DePasquale EAK - Search Results

1

Defining the T cell transcriptional landscape in pediatric liver transplant rejection at single cell resolution.

Peters AL, DePasquale EAK, Begum G, Roskin KM, Woodle ES, Hildeman DA. Peters AL, et al. Among authors: depasquale eak. bioRxiv [Preprint]. 2024 Feb 29:2024.02.26.582173. doi: 10.1101/2024.02.26.582173. bioRxiv. 2024. PMID: 38464256 Free PMC article. Preprint.

2

WAT3R: recovery of T-cell receptor variable regions from 3' single-cell RNA-sequencing.

Ainciburu M, Morgan DM, DePasquale EAK, Love JC, Prósper F, van Galen P. Ainciburu M, et al. Among authors: depasquale eak. Bioinformatics. 2022 Jul 11;38(14):3645-3647. doi: 10.1093/bioinformatics/btac382. Bioinformatics. 2022. PMID: 35674381 Free PMC article.

3

Plasticity and immune evasion in childhood ALL.

DePasquale EAK, van Galen P. DePasquale EAK, et al. Blood. 2022 Apr 7;139(14):2096-2097. doi: 10.1182/blood.2021015117. Blood. 2022. PMID: 35389444 Free article. No abstract available.

4

Single-Cell Multiomics Reveals Clonal T-Cell Expansions and Exhaustion in Blastic Plasmacytoid Dendritic Cell Neoplasm.

DePasquale EAK, Ssozi D, Ainciburu M, Good J, Noel J, Villanueva MA, Couturier CP, Shalek AK, Aranki SF, Mallidi HR, Griffin GK, Lane AA, van Galen P. DePasquale EAK, et al. Front Immunol. 2022 Mar 10;13:809414. doi: 10.3389/fimmu.2022.809414. eCollection 2022. Front Immunol. 2022. PMID: 35359938 Free PMC article.

5

Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations.

Miller TE, Lareau CA, Verga JA, DePasquale EAK, Liu V, Ssozi D, Sandor K, Yin Y, Ludwig LS, El Farran CA, Morgan DM, Satpathy AT, Griffin GK, Lane AA, Love JC, Bernstein BE, Sankaran VG, van Galen P. Miller TE, et al. Among authors: depasquale eak. Nat Biotechnol. 2022 Jul;40(7):1030-1034. doi: 10.1038/s41587-022-01210-8. Epub 2022 Feb 24. Nat Biotechnol. 2022. PMID: 35210612 Free PMC article.

6

KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data.

DePasquale EAK, Alganem K, Bentea E, Nawreen N, McGuire JL, Tomar T, Naji F, Hilhorst R, Meller J, McCullumsmith RE. DePasquale EAK, et al. PLoS One. 2021 Dec 17;16(12):e0260440. doi: 10.1371/journal.pone.0260440. eCollection 2021. PLoS One. 2021. PMID: 34919543 Free PMC article.

7

Protocol for Identification and Removal of Doublets with DoubletDecon.

DePasquale EAK, Schnell D, Chetal K, Salomonis N. DePasquale EAK, et al. STAR Protoc. 2020 Aug 11;1(2):100085. doi: 10.1016/j.xpro.2020.100085. eCollection 2020 Sep 18. STAR Protoc. 2020. PMID: 33111118 Free PMC article.

8

Corticostriatal dysfunction and social interaction deficits in mice lacking the cystine/glutamate antiporter.

Bentea E, Villers A, Moore C, Funk AJ, O'Donovan SM, Verbruggen L, Lara O, Janssen P, De Pauw L, Declerck NB, DePasquale EAK, Churchill MJ, Sato H, Hermans E, Arckens L, Meshul CK, Ris L, McCullumsmith RE, Massie A. Bentea E, et al. Among authors: depasquale eak. Mol Psychiatry. 2021 Sep;26(9):4754-4769. doi: 10.1038/s41380-020-0751-3. Epub 2020 May 4. Mol Psychiatry. 2021. PMID: 32366950 Free PMC article.

9

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data.

DePasquale EAK, Schnell DJ, Van Camp PJ, Valiente-Alandí Í, Blaxall BC, Grimes HL, Singh H, Salomonis N. DePasquale EAK, et al. Cell Rep. 2019 Nov 5;29(6):1718-1727.e8. doi: 10.1016/j.celrep.2019.09.082. Cell Rep. 2019. PMID: 31693907 Free PMC article.

10

cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes.

DePasquale EAK, Schnell D, Dexheimer P, Ferchen K, Hay S, Chetal K, Valiente-Alandí Í, Blaxall BC, Grimes HL, Salomonis N. DePasquale EAK, et al. Nucleic Acids Res. 2019 Dec 2;47(21):e138. doi: 10.1093/nar/gkz789. Nucleic Acids Res. 2019. PMID: 31529053 Free PMC article.

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