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Page 1
Ribonanza: deep learning of RNA structure through dual crowdsourcing.
He S, Huang R, Townley J, Kretsch RC, Karagianes TG, Cox DBT, Blair H, Penzar D, Vyaltsev V, Aristova E, Zinkevich A, Bakulin A, Sohn H, Krstevski D, Fukui T, Tatematsu F, Uchida Y, Jang D, Lee JS, Shieh R, Ma T, Martynov E, Shugaev MV, Bukhari HST, Fujikawa K, Onodera K, Henkel C, Ron S, Romano J, Nicol JJ, Nye GP, Wu Y, Choe C, Reade W, Participants E, Das R. He S, et al. Among authors: reade w. bioRxiv [Preprint]. 2024 Feb 27:2024.02.24.581671. doi: 10.1101/2024.02.24.581671. bioRxiv. 2024. PMID: 38464325 Free PMC article. Preprint.
Deep learning models for predicting RNA degradation via dual crowdsourcing.
Wayment-Steele HK, Kladwang W, Watkins AM, Kim DS, Tunguz B, Reade W, Demkin M, Romano J, Wellington-Oguri R, Nicol JJ, Gao J, Onodera K, Fujikawa K, Mao H, Vandewiele G, Tinti M, Steenwinckel B, Ito T, Noumi T, He S, Ishi K, Lee Y, Öztürk F, Chiu KY, Öztürk E, Amer K, Fares M; Eterna Participants; Das R. Wayment-Steele HK, et al. Among authors: reade w. Nat Mach Intell. 2022;4(12):1174-1184. doi: 10.1038/s42256-022-00571-8. Epub 2022 Dec 14. Nat Mach Intell. 2022. PMID: 36567960 Free PMC article.
Deep learning models for predicting RNA degradation via dual crowdsourcing.
Wayment-Steele HK, Kladwang W, Watkins AM, Kim DS, Tunguz B, Reade W, Demkin M, Romano J, Wellington-Oguri R, Nicol JJ, Gao J, Onodera K, Fujikawa K, Mao H, Vandewiele G, Tinti M, Steenwinckel B, Ito T, Noumi T, He S, Ishi K, Lee Y, Öztürk F, Chiu A, Öztürk E, Amer K, Fares M, Participants E, Das R. Wayment-Steele HK, et al. Among authors: reade w. ArXiv [Preprint]. 2021 Oct 14:arXiv:2110.07531v2. ArXiv. 2021. PMID: 34671698 Free PMC article. Updated. Preprint.
CAFA-evaluator: a Python tool for benchmarking ontological classification methods.
Piovesan D, Zago D, Joshi P, De Paolis Kaluza MC, Mehdiabadi M, Ramola R, Monzon AM, Reade W, Friedberg I, Radivojac P, Tosatto SCE. Piovesan D, et al. Among authors: reade w. Bioinform Adv. 2024 Mar 14;4(1):vbae043. doi: 10.1093/bioadv/vbae043. eCollection 2024. Bioinform Adv. 2024. PMID: 38545087 Free PMC article.
A community-powered search of machine learning strategy space to find NMR property prediction models.
Bratholm LA, Gerrard W, Anderson B, Bai S, Choi S, Dang L, Hanchar P, Howard A, Kim S, Kolter Z, Kondor R, Kornbluth M, Lee Y, Lee Y, Mailoa JP, Nguyen TT, Popovic M, Rakocevic G, Reade W, Song W, Stojanovic L, Thiede EH, Tijanic N, Torrubia A, Willmott D, Butts CP, Glowacki DR. Bratholm LA, et al. Among authors: reade w. PLoS One. 2021 Jul 20;16(7):e0253612. doi: 10.1371/journal.pone.0253612. eCollection 2021. PLoS One. 2021. PMID: 34283864 Free PMC article.
Laboratory earthquake forecasting: A machine learning competition.
Johnson PA, Rouet-Leduc B, Pyrak-Nolte LJ, Beroza GC, Marone CJ, Hulbert C, Howard A, Singer P, Gordeev D, Karaflos D, Levinson CJ, Pfeiffer P, Puk KM, Reade W. Johnson PA, et al. Among authors: reade w. Proc Natl Acad Sci U S A. 2021 Feb 2;118(5):e2011362118. doi: 10.1073/pnas.2011362118. Proc Natl Acad Sci U S A. 2021. PMID: 33495346 Free PMC article.
A bias in the diagnosis of schizophrenia.
Reade WK, Wertheimer M. Reade WK, et al. J Consult Clin Psychol. 1976 Oct;44(5):878. doi: 10.1037//0022-006x.44.5.878. J Consult Clin Psychol. 1976. PMID: 965568 No abstract available.