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Page 1
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Métairon S, Moine D, Rigoreau M, Stolte J, Hamon P, Couturon E, Tranchant-Dubreuil C, Mukherjee M, Lan T, Engelhardt J, Stadler P, Correia De Lemos SM, Suzuki SI, Sumirat U, Wai CM, Dauchot N, Orozco-Arias S, Garavito A, Kiwuka C, Musoli P, Nalukenge A, Guichoux E, Reinout H, Smit M, Carretero-Paulet L, Filho OG, Braghini MT, Padilha L, Sera GH, Ruttink T, Henry R, Marraccini P, Van de Peer Y, Andrade A, Domingues D, Giuliano G, Mueller L, Pereira LF, Plaisance S, Poncet V, Rombauts S, Sankoff D, Albert VA, Crouzillat D, de Kochko A, Descombes P. Salojärvi J, et al. Among authors: rastas p. Nat Genet. 2024 Apr;56(4):721-731. doi: 10.1038/s41588-024-01695-w. Epub 2024 Apr 15. Nat Genet. 2024. PMID: 38622339 Free PMC article.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: rastas p. Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. Epub 2024 Mar 26. Cell Genom. 2024. PMID: 38537634 Free PMC article.
Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies.
Cicconardi F, Milanetti E, Pinheiro de Castro EC, Mazo-Vargas A, Van Belleghem SM, Ruggieri AA, Rastas P, Hanly J, Evans E, Jiggins CD, Owen McMillan W, Papa R, Di Marino D, Martin A, Montgomery SH. Cicconardi F, et al. Among authors: rastas p. Nat Commun. 2023 Sep 12;14(1):5620. doi: 10.1038/s41467-023-41412-5. Nat Commun. 2023. PMID: 37699868 Free PMC article.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: rastas p. bioRxiv [Preprint]. 2023 Sep 28:2023.04.13.536694. doi: 10.1101/2023.04.13.536694. bioRxiv. 2023. PMID: 37214860 Free PMC article. Updated. Preprint.
Evidence for a single, ancient origin of a genus-wide alternative life history strategy.
Tunström K, Woronik A, Hanly JJ, Rastas P, Chichvarkhin A, Warren AD, Kawahara AY, Schoville SD, Ficarrotta V, Porter AH, Watt WB, Martin A, Wheat CW. Tunström K, et al. Among authors: rastas p. Sci Adv. 2023 Mar 22;9(12):eabq3713. doi: 10.1126/sciadv.abq3713. Epub 2023 Mar 22. Sci Adv. 2023. PMID: 36947619 Free PMC article.
Fragmented habitat compensates for the adverse effects of genetic bottleneck.
Löytynoja A, Rastas P, Valtonen M, Kammonen J, Holm L, Olsen MT, Paulin L, Jernvall J, Auvinen P. Löytynoja A, et al. Among authors: rastas p. Curr Biol. 2023 Mar 27;33(6):1009-1018.e7. doi: 10.1016/j.cub.2023.01.040. Epub 2023 Feb 22. Curr Biol. 2023. PMID: 36822202 Free article.
Predicting recombination frequency from map distance.
Kivikoski M, Rastas P, Löytynoja A, Merilä J. Kivikoski M, et al. Among authors: rastas p. Heredity (Edinb). 2023 Mar;130(3):114-121. doi: 10.1038/s41437-022-00585-3. Epub 2022 Dec 24. Heredity (Edinb). 2023. PMID: 36566319 Free PMC article.
Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations.
Seyum EG, Bille NH, Abtew WG, Rastas P, Arifianto D, Domonhédo H, Cochard B, Jacob F, Riou V, Pomiès V, Lopez D, Bell JM, Cros D. Seyum EG, et al. Among authors: rastas p. J Appl Genet. 2022 Dec;63(4):633-650. doi: 10.1007/s13353-022-00708-w. Epub 2022 Jun 13. J Appl Genet. 2022. PMID: 35691996
50 results