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Let-7 restrains an oncogenic epigenetic circuit in AT2 cells to prevent ectopic formation of fibrogenic transitional cell intermediates and pulmonary fibrosis.
bioRxiv [Preprint]. 2024 May 27:2024.05.22.595205. doi: 10.1101/2024.05.22.595205.
bioRxiv. 2024.
PMID: 38826218
Free PMC article.
Preprint.
Nerve injury inhibits Oprd1 and Cnr1 transcription through REST in primary sensory neurons.
Subedi A, Tiwari A, Etemad AF, Huang Y, Chatterjee B, McLeod SL, Lu Y, Gonzalez D, Ghosh K, Singh SK, Ruiz Echartea ME, Grimm SL, Coarfa C, Pan HL, Majumder S.
Subedi A, et al. Among authors: ruiz echartea me.
bioRxiv [Preprint]. 2024 Apr 8:2024.02.17.579842. doi: 10.1101/2024.02.17.579842.
bioRxiv. 2024.
PMID: 38585789
Free PMC article.
Preprint.
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Using restraints in EROS-DOCK improves model quality in pairwise and multicomponent protein docking.
Ruiz Echartea ME, Ritchie DW, Chauvot de Beauchêne I.
Ruiz Echartea ME, et al.
Proteins. 2020 Aug;88(8):1121-1128. doi: 10.1002/prot.25959. Epub 2020 Jul 8.
Proteins. 2020.
PMID: 32506478
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Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Hon…
See abstract for full author list ➔
Lensink MF, et al. Among authors: ruiz echartea me.
Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25.
Proteins. 2019.
PMID: 31612567
Free PMC article.
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EROS-DOCK: protein-protein docking using exhaustive branch-and-bound rotational search.
Ruiz Echartea ME, Chauvot de Beauchêne I, Ritchie DW.
Ruiz Echartea ME, et al.
Bioinformatics. 2019 Dec 1;35(23):5003-5010. doi: 10.1093/bioinformatics/btz434.
Bioinformatics. 2019.
PMID: 31125060
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