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Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.
Masonbrink R, Maier TR, Muppirala U, Seetharam AS, Lord E, Juvale PS, Schmutz J, Johnson NT, Korkin D, Mitchum MG, Mimee B, den Akker SE, Hudson M, Severin AJ, Baum TJ. Masonbrink R, et al. Among authors: schmutz j. BMC Genomics. 2024 May 31;25(1):537. doi: 10.1186/s12864-024-10466-0. BMC Genomics. 2024. PMID: 38822236 Free PMC article. No abstract available.
Genome resources for three modern cotton lines guide future breeding efforts.
Sreedasyam A, Lovell JT, Mamidi S, Khanal S, Jenkins JW, Plott C, Bryan KB, Li Z, Shu S, Carlson J, Goodstein D, De Santiago L, Kirkbride RC, Calleja S, Campbell T, Koebernick JC, Dever JK, Scheffler JA, Pauli D, Jenkins JN, McCarty JC, Williams M, Boston L, Webber J, Udall JA, Chen ZJ, Bourland F, Stiller WN, Saski CA, Grimwood J, Chee PW, Jones DC, Schmutz J. Sreedasyam A, et al. Among authors: schmutz j. Nat Plants. 2024 May 30. doi: 10.1038/s41477-024-01713-z. Online ahead of print. Nat Plants. 2024. PMID: 38816498
CXCR4 Antagonist in HPV5-Associated Perianal Squamous-Cell Carcinoma.
Marin-Esteban V, Molet L, Laganà M, Ciocan D, Dominguez-Lafage C, Alouche N, Nguyen J, Gallego C, Mercier-Nomé F, Jaracz-Ros A, Beaupain B, Bouligand J, Proust A, Habib C, Bonnin RA, Girlich D, Fouyssac F, Schmutz JL, Bursztejn AC, Bellanné-Chantelot C, Bourrat E, Herfs M, Espéli M, Balabanian K, Schlecht-Louf G, Donadieu J, Bachelerie F, Deback C. Marin-Esteban V, et al. Among authors: schmutz jl. N Engl J Med. 2024 Apr 11;390(14):1339-1341. doi: 10.1056/NEJMc2213180. N Engl J Med. 2024. PMID: 38598804 No abstract available.
Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders.
Hiatt SM, Lawlor JMJ, Handley LH, Latner DR, Bonnstetter ZT, Finnila CR, Thompson ML, Boston LB, Williams M, Nunez IR, Jenkins J, Kelley WV, Bebin EM, Lopez MA, Hurst ACE, Korf BR, Schmutz J, Grimwood J, Cooper GM. Hiatt SM, et al. Among authors: schmutz j. medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304633. doi: 10.1101/2024.03.22.24304633. medRxiv. 2024. PMID: 38585854 Free PMC article. Preprint.
The complex polyploid genome architecture of sugarcane.
Healey AL, Garsmeur O, Lovell JT, Shengquiang S, Sreedasyam A, Jenkins J, Plott CB, Piperidis N, Pompidor N, Llaca V, Metcalfe CJ, Doležel J, Cápal P, Carlson JW, Hoarau JY, Hervouet C, Zini C, Dievart A, Lipzen A, Williams M, Boston LB, Webber J, Keymanesh K, Tejomurthula S, Rajasekar S, Suchecki R, Furtado A, May G, Parakkal P, Simmons BA, Barry K, Henry RJ, Grimwood J, Aitken KS, Schmutz J, D'Hont A. Healey AL, et al. Among authors: schmutz j. Nature. 2024 Apr;628(8009):804-810. doi: 10.1038/s41586-024-07231-4. Epub 2024 Mar 27. Nature. 2024. PMID: 38538783 Free PMC article.
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.
Ma X, Vanneste S, Chang J, Ambrosino L, Barry K, Bayer T, Bobrov AA, Boston L, Campbell JE, Chen H, Chiusano ML, Dattolo E, Grimwood J, He G, Jenkins J, Khachaturyan M, Marín-Guirao L, Mesterházy A, Muhd DD, Pazzaglia J, Plott C, Rajasekar S, Rombauts S, Ruocco M, Scott A, Tan MP, Van de Velde J, Vanholme B, Webber J, Wong LL, Yan M, Sung YY, Novikova P, Schmutz J, Reusch TBH, Procaccini G, Olsen JL, Van de Peer Y. Ma X, et al. Among authors: schmutz j. Nat Plants. 2024 Feb;10(2):240-255. doi: 10.1038/s41477-023-01608-5. Epub 2024 Jan 26. Nat Plants. 2024. PMID: 38278954
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
Li C, Wickell D, Kuo LY, Chen X, Nie B, Liao X, Peng D, Ji J, Jenkins J, Williams M, Shu S, Plott C, Barry K, Rajasekar S, Grimwood J, Han X, Sun S, Hou Z, He W, Dai G, Sun C, Schmutz J, Leebens-Mack JH, Li FW, Wang L. Li C, et al. Among authors: schmutz j. Proc Natl Acad Sci U S A. 2024 Jan 23;121(4):e2312607121. doi: 10.1073/pnas.2312607121. Epub 2024 Jan 18. Proc Natl Acad Sci U S A. 2024. PMID: 38236735
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.
Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS. Bredeson JV, et al. Among authors: schmutz j. Nat Commun. 2024 Jan 17;15(1):579. doi: 10.1038/s41467-023-43012-9. Nat Commun. 2024. PMID: 38233380 Free PMC article.
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.
Lei L, Gordon SP, Liu L, Sade N, Lovell JT, Rubio Wilhelmi MDM, Singan V, Sreedasyam A, Hestrin R, Phillips J, Hernandez BT, Barry K, Shu S, Jenkins J, Schmutz J, Goodstein DM, Thilmony R, Blumwald E, Vogel JP. Lei L, et al. Among authors: schmutz j. G3 (Bethesda). 2023 Dec 29;14(1):jkad245. doi: 10.1093/g3journal/jkad245. G3 (Bethesda). 2023. PMID: 37883711 Free PMC article.
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