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Evaluation of Hi-C sequencing for the detection of gene fusions in hematologic and solid pediatric cancer samples.
medRxiv [Preprint]. 2024 May 12:2024.05.10.24306838. doi: 10.1101/2024.05.10.24306838.
medRxiv. 2024.
PMID: 38765974
Free PMC article.
Preprint.
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.
Keskus A, Bryant A, Ahmad T, Yoo B, Aganezov S, Goretsky A, Donmez A, Lansdon LA, Rodriguez I, Park J, Liu Y, Cui X, Gardner J, McNulty B, Sacco S, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Cook DE, Chang PC, Kolesnikov A, Carroll A, Molloy EK, Pushel I, Guest E, Pastinen T, Shafin K, Miga KH, Malikic S, Day CP, Robine N, Sahinalp C, Dean M, Farooqi MS, Paten B, Kolmogorov M.
Keskus A, et al. Among authors: pushel i.
medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304756. doi: 10.1101/2024.03.22.24304756.
medRxiv. 2024.
PMID: 38585974
Free PMC article.
Preprint.
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Analysis of lamprey meis genes reveals that conserved inputs from Hox, Meis and Pbx proteins control their expression in the hindbrain and neural tube.
Parker HJ, De Kumar B, Pushel I, Bronner ME, Krumlauf R.
Parker HJ, et al. Among authors: pushel i.
Dev Biol. 2021 Nov;479:61-76. doi: 10.1016/j.ydbio.2021.07.014. Epub 2021 Jul 24.
Dev Biol. 2021.
PMID: 34310923
Free article.
Item in Clipboard
Predicting neuroblastoma using developmental signals and a logic-based model.
Kasemeier-Kulesa JC, Schnell S, Woolley T, Spengler JA, Morrison JA, McKinney MC, Pushel I, Wolfe LA, Kulesa PM.
Kasemeier-Kulesa JC, et al. Among authors: pushel i.
Biophys Chem. 2018 Jul;238:30-38. doi: 10.1016/j.bpc.2018.04.004. Epub 2018 Apr 30.
Biophys Chem. 2018.
PMID: 29734136
Free PMC article.
Item in Clipboard
Coupling the roles of Hox genes to regulatory networks patterning cranial neural crest.
Parker HJ, Pushel I, Krumlauf R.
Parker HJ, et al. Among authors: pushel i.
Dev Biol. 2018 Dec 1;444 Suppl 1:S67-S78. doi: 10.1016/j.ydbio.2018.03.016. Epub 2018 Mar 20.
Dev Biol. 2018.
PMID: 29571614
Free article.
Review.
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HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R.
De Kumar B, et al. Among authors: pushel i.
Genome Res. 2017 Sep;27(9):1501-1512. doi: 10.1101/gr.219386.116. Epub 2017 Aug 7.
Genome Res. 2017.
PMID: 28784834
Free PMC article.
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Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo.
Sayal R, Dresch JM, Pushel I, Taylor BR, Arnosti DN.
Sayal R, et al. Among authors: pushel i.
Elife. 2016 May 6;5:e08445. doi: 10.7554/eLife.08445.
Elife. 2016.
PMID: 27152947
Free PMC article.
Item in Clipboard
Integrated stability and activity control of the Drosophila Rbf1 retinoblastoma protein.
Zhang L, Wei Y, Pushel I, Heinze K, Elenbaas J, Henry RW, Arnosti DN.
Zhang L, et al. Among authors: pushel i.
J Biol Chem. 2014 Sep 5;289(36):24863-73. doi: 10.1074/jbc.M114.586818. Epub 2014 Jul 21.
J Biol Chem. 2014.
PMID: 25049232
Free PMC article.
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