Newberg LA - Search Results

1

Focused active learning for histopathological image classification.

Schmidt A, Morales-Álvarez P, Cooper LA, Newberg LA, Enquobahrie A, Molina R, Katsaggelos AK. Schmidt A, et al. Among authors: newberg la. Med Image Anal. 2024 Apr 4;95:103162. doi: 10.1016/j.media.2024.103162. Online ahead of print. Med Image Anal. 2024. PMID: 38593644

2

Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.

Newberg LA, Chen X, Kodira CD, Zavodszky MI. Newberg LA, et al. PLoS One. 2018 Mar 1;13(3):e0193067. doi: 10.1371/journal.pone.0193067. eCollection 2018. PLoS One. 2018. PMID: 29494600 Free PMC article.

3

Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data.

Palumbo MJ, Newberg LA. Palumbo MJ, et al. Among authors: newberg la. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W268-74. doi: 10.1093/nar/gkq330. Epub 2010 Apr 30. Nucleic Acids Res. 2010. PMID: 20435683 Free PMC article.

4

Error statistics of hidden Markov model and hidden Boltzmann model results.

Newberg LA. Newberg LA. BMC Bioinformatics. 2009 Jul 9;10:212. doi: 10.1186/1471-2105-10-212. BMC Bioinformatics. 2009. PMID: 19589158 Free PMC article.

5

Exact calculation of distributions on integers, with application to sequence alignment.

Newberg LA, Lawrence CE. Newberg LA, et al. J Comput Biol. 2009 Jan;16(1):1-18. doi: 10.1089/cmb.2008.0137. J Comput Biol. 2009. PMID: 19119992 Free PMC article.

6

Significance of gapped sequence alignments.

Newberg LA. Newberg LA. J Comput Biol. 2008 Nov;15(9):1187-94. doi: 10.1089/cmb.2008.0125. J Comput Biol. 2008. PMID: 18973434 Free PMC article.

7

Memory-efficient dynamic programming backtrace and pairwise local sequence alignment.

Newberg LA. Newberg LA. Bioinformatics. 2008 Aug 15;24(16):1772-8. doi: 10.1093/bioinformatics/btn308. Epub 2008 Jun 16. Bioinformatics. 2008. PMID: 18558620 Free PMC article.

8

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction.

Newberg LA, Thompson WA, Conlan S, Smith TM, McCue LA, Lawrence CE. Newberg LA, et al. Bioinformatics. 2007 Jul 15;23(14):1718-27. doi: 10.1093/bioinformatics/btm241. Epub 2007 May 8. Bioinformatics. 2007. PMID: 17488758 Free PMC article.

9

The Gibbs Centroid Sampler.

Thompson WA, Newberg LA, Conlan S, McCue LA, Lawrence CE. Thompson WA, et al. Among authors: newberg la. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W232-7. doi: 10.1093/nar/gkm265. Epub 2007 May 5. Nucleic Acids Res. 2007. PMID: 17483517 Free PMC article.

10

PhyloScan: identification of transcription factor binding sites using cross-species evidence.

Carmack CS, McCue LA, Newberg LA, Lawrence CE. Carmack CS, et al. Among authors: newberg la. Algorithms Mol Biol. 2007 Jan 23;2:1. doi: 10.1186/1748-7188-2-1. Algorithms Mol Biol. 2007. PMID: 17244358 Free PMC article.

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