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Improving microbial phylogeny with citizen science within a mass-market video game.
Nat Biotechnol. 2024 Apr 15. doi: 10.1038/s41587-024-02175-6. Online ahead of print.
Nat Biotechnol. 2024.
PMID: 38622344
When online citizen science meets teaching: Storyfication of a science discovery game to teach, learn, and contribute to genomic research.
Drogaris C, Butyaev A, Nazarova E, Sarrazin-Gendron R, Patel H, Singh A, Kadota B, Waldispühl J.
Drogaris C, et al. Among authors: butyaev a.
Biochem Mol Biol Educ. 2024 Mar-Apr;52(2):145-155. doi: 10.1002/bmb.21796. Epub 2023 Nov 6.
Biochem Mol Biol Educ. 2024.
PMID: 37929794
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits.
Dort EN, Layne E, Feau N, Butyaev A, Henrissat B, Martin FM, Haridas S, Salamov A, Grigoriev IV, Blanchette M, Hamelin RC.
Dort EN, et al. Among authors: butyaev a.
Sci Rep. 2023 Oct 11;13(1):17203. doi: 10.1038/s41598-023-44005-w.
Sci Rep. 2023.
PMID: 37821494
Free PMC article.
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Human-supervised clustering of multidimensional data using crowdsourcing.
Butyaev A, Drogaris C, Tremblay-Savard O, Waldispühl J.
Butyaev A, et al.
R Soc Open Sci. 2022 May 24;9(5):211189. doi: 10.1098/rsos.211189. eCollection 2022 May.
R Soc Open Sci. 2022.
PMID: 35620007
Free PMC article.
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Fast and flexible coarse-grained prediction of protein folding routes using ensemble modeling and evolutionary sequence variation.
Becerra D, Butyaev A, Waldispühl J.
Becerra D, et al. Among authors: butyaev a.
Bioinformatics. 2020 Mar 1;36(5):1420-1428. doi: 10.1093/bioinformatics/btz743.
Bioinformatics. 2020.
PMID: 31584628
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American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R.
McDonald D, et al.
mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.
mSystems. 2018.
PMID: 29795809
Free PMC article.
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Storage, visualization, and navigation of 3D genomics data.
Waldispühl J, Zhang E, Butyaev A, Nazarova E, Cyr Y.
Waldispühl J, et al. Among authors: butyaev a.
Methods. 2018 Jun 1;142:74-80. doi: 10.1016/j.ymeth.2018.05.008. Epub 2018 May 22.
Methods. 2018.
PMID: 29792917
Review.
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A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.
Butyaev A, Mavlyutov R, Blanchette M, Cudré-Mauroux P, Waldispühl J.
Butyaev A, et al.
Nucleic Acids Res. 2015 Sep 18;43(16):e103. doi: 10.1093/nar/gkv476. Epub 2015 May 18.
Nucleic Acids Res. 2015.
PMID: 25990738
Free PMC article.
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