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Improving microbial phylogeny with citizen science within a mass-market video game.
Sarrazin-Gendron R, Ghasemloo Gheidari P, Butyaev A, Keding T, Cai E, Zheng J, Mutalova R, Mounthanyvong J, Zhu Y, Nazarova E, Drogaris C, Erhart K; Borderlands Science Development Team; Borderlands Science players; Brouillette A, Richard G, Pitchford R, Caisse S, Blanchette M, McDonald D, Knight R, Szantner A, Waldispühl J. Sarrazin-Gendron R, et al. Among authors: waldispuhl j. Nat Biotechnol. 2024 Apr 15. doi: 10.1038/s41587-024-02175-6. Online ahead of print. Nat Biotechnol. 2024. PMID: 38622344
Phylo: a citizen science approach for improving multiple sequence alignment.
Kawrykow A, Roumanis G, Kam A, Kwak D, Leung C, Wu C, Zarour E; Phylo players; Sarmenta L, Blanchette M, Waldispühl J. Kawrykow A, et al. Among authors: waldispuhl j. PLoS One. 2012;7(3):e31362. doi: 10.1371/journal.pone.0031362. Epub 2012 Mar 7. PLoS One. 2012. PMID: 22412834 Free PMC article.
American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.
Leveling up citizen science.
Waldispühl J, Szantner A, Knight R, Caisse S, Pitchford R. Waldispühl J, et al. Nat Biotechnol. 2020 Oct;38(10):1124-1126. doi: 10.1038/s41587-020-0694-x. Nat Biotechnol. 2020. PMID: 32973359 No abstract available.
Modeling and Predicting RNA Three-Dimensional Structures.
Reinharz V, Sarrazin-Gendron R, Waldispühl J. Reinharz V, et al. Among authors: waldispuhl j. Methods Mol Biol. 2021;2284:17-42. doi: 10.1007/978-1-0716-1307-8_2. Methods Mol Biol. 2021. PMID: 33835435
61 results